DR908994

Overview
NameDR908994
Unique NameDR908994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.556e-31
Identity = 63/100 (63.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:    3 LLQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            LLQ  PS+MQA++ M  LD LS+HSPDEEY+G+  EPAW  +P++KAAFEKF+ +++E EG ID RN+N   +NR GAGIVPYELLKPFS PG TG+G+P
Sbjct:  792 LLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.832e-30
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 3
Query:    3 LLQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVPY 305
            LL+ +PS+ QA   MV LD LSTHSPDEEY+G++ E +W ++PVI AAFE+F  K+Q LEG+ID+RN N  L+NR GAG+V YELLKP S  G TG GVPY
Sbjct:  792 LLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.764e-27
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 LLQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L +CFPS++QA   M +LD LSTHS DEEYLG E    W  D  ++AA+  F  +++E+EG+ID RN +  L+NR GAGI+PY+L+KPFS  G TG G+P
Sbjct:  837 LRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.507e-26
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 LLQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L +CFPS++QA   M +LD LS+HS DEEYLG E    W  D  ++AA++ F  +++E+EG+ID RN +  L+NR GAGI+PY+L+KPFS  G TG G+P
Sbjct:  820 LRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.752e-20
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L   PS  Q    M ++DTLSTHS DEEYLG+  + AW  DP   AA  +F   ++  E  I+ RN++ + RNR GAG++PYEL+ P SGPG T +GVP
Sbjct:  796 LSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVP 894          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   18 PSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPA-WGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            PS +Q  + M ++DTLSTHSPDEEY+G+  +P+ W  D  I  AF  F+ ++  +E  ID RN + + RNR GAG++PYEL+ P S PG T +GVP
Sbjct:  826 PSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLG--KEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            L   P+++QA + M + +TLSTHSPDEEYL   +E++  W  D  +   F KF+ ++ ++E  I++RN ++ L+NRTGAG+ PYELL P S  G TG+G+P
Sbjct:  812 LGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.191e-19
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   18 PSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPA-WGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGVP 302
            PS  Q  + M ++DTLSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  I+ RN++ + RNR GAG++PYELL P S PG T +GVP
Sbjct:  819 PSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.394e-18
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 3
Query:    3 LLQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATG 290
            LL  FPS+ Q+   + ILD LSTHS DEEY+G   EPAW  D VI  AFE+F    +++   +D+ N++ + +NR GAG+VPY LL+P  G    G
Sbjct:  822 LLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDG 917          
BLAST of DR908994 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 3
Query:    6 LQCFPSKMQAMQDMVILDTLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEKFNRKMQELEGIIDDRNSNENLRNRTGAGIVPYELLKPFSGPGATGKGV 299
            L   PS++Q +  M  LD LS+H+ DEEY+G   EPAW  D  +  AF+ F +KM+++   +++ N +++ RNR GAG+VPY LL+P +G     K V
Sbjct:  824 LDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTV 921          
The following BLAST results are available for this feature:
BLAST of DR908994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LOX23_HORVU1.556e-3163.00Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH3.832e-3061.39Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ6.764e-2753.00Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.507e-2652.00Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX5_ORYSJ2.752e-2048.48Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH1.046e-1948.96Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH3.043e-1945.54Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_ARATH5.191e-1948.96Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU4.394e-1846.88Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU1.670e-1741.84Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17122 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908994 ID=DR908994; Name=DR908994; organism=Citrus sinensis; type=EST; length=553bp
CACTTTTGCAATGCTTTCCTTCAAAGATGCAAGCTATGCAAGATATGGTC
ATTCTGGATACGCTGTCGACTCATTCGCCTGATGAGGAGTATTTGGGGAA
GGAAATGGAGCCCGCCTGGGGTGATGACCCAGTTATAAAGGCTGCATTTG
AAAAGTTTAATCGCAAGATGCAGGAGCTTGAAGGGATCATTGATGACAGA
AATTCGAATGAGAATTTGAGGAACAGAACTGGGGCTGGGATCGTGCCATA
TGAGCTCTTGAAGCCATTTTCGGGACCTGGTGCAACAGGAAAAGGAGTTC
CGTACAGCATCTCCATCTAGAGTGCGCAAAGCTCATTGCAAATAAAACTT
TAAGAAATAAAATGTCACTTTTGTTTAACCTAAATAAGTTCCGCTTGTCC
GAACTTTTTCAAGCAAGCACAACACCAAAACTTTCAGCGAGCTCATTGCA
CAGTTTTGGTAGTTTACGTTTGTATTTTATGTTGCATGTGAGTCCTATCC
ACGATATTATGTTATGATACTAATGTAAAAGTCAAGCAAAATATTAAATT
TTT
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