DR908993

Overview
NameDR908993
Unique NameDR908993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908993 vs. ExPASy Swiss-Prot
Match: LECA_MACPO (Agglutinin alpha chain OS=Maclura pomifera PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.262e-19
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 2
Query:    2 GNPVTAEKHGG-VGGNRTAEIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 295
            G P  AE H   + G +  +I L FP E+++ VSG+   V   G  VIRSLTFK+NK+T+GP+GV  GTPF+  ++ GL+VGFKG  G+++D    YLS
Sbjct:   36 GMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVE--GYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLS 132          
BLAST of DR908993 vs. ExPASy Swiss-Prot
Match: LECA_CASCR (Agglutinin OS=Castanea crenata PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 GNPVTAEKHGGVGGNRTAEIKLRFPEEFLISVSGHYCPVVYGGS-PVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 292
            G P+ + KHGG GG     IKL   +EFLI ++G Y PV   GS   +RS+TF +NK  +GP+G E G  FT S+  G VVGF GRSG Y+DAIG ++
Sbjct:  209 GEPLLSPKHGGEGGEPIDPIKLEVSKEFLIRIAGFYGPVEGSGSFKALRSITFYTNKAKYGPYGDEIGQAFTSSVAPGRVVGFHGRSGAYLDAIGVHM 306          

HSP 2 Score: 84.3445 bits (207), Expect = 4.169e-16
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 2
Query:   17 AEKHGGVG-GNRTAEIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRT-FGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKKQ 304
            + K GG G G +T +I L +PEE+L S+SG    +      +IRS++FK+NK T +GP+GV  G PF++S +GG++VGF GRSG  +DAIG Y+   Q
Sbjct:   55 SRKFGGTGEGWKTDKISLNWPEEYLTSISGTVADLWQ--HIIIRSISFKTNKGTEYGPYGVVTGQPFSYSTEGGVIVGFHGRSGTLLDAIGAYVKIPQ 150          
BLAST of DR908993 vs. ExPASy Swiss-Prot
Match: LECA_ARTIN (Agglutinin alpha chain OS=Artocarpus integer PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.296e-17
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 2
Query:    2 GNPVTAEKHGG-VGGNRTAEIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLS 295
            G+P   + H   + G    +I L FP E+++ VSG+   V   G  V+RSLTFK+NK+T+GP+GV  GTPF   ++ GL+VGFKG  G+++D    YLS
Sbjct:   36 GSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNV--SGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLS 132          
BLAST of DR908993 vs. ExPASy Swiss-Prot
Match: LEC_PARPC (Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   56 EIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFG-VEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYL 292
            +IK+ +P E+L S+SG Y    Y G  VIRSL+F +N  T+GPFG    G  F+  +   +VVGF GR+G+Y+DA+G ++
Sbjct:   69 KIKIHWPTEYLKSISGSYGD--YNGVLVIRSLSFITNLTTYGPFGSTSGGESFSIPIADSVVVGFHGRAGYYLDALGIFV 146          

HSP 2 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 2
Query:    5 NPVTAEKHGGVGGNRTAEIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFYLSKK 301
            N +  EK   + GN           E L S+SG Y    Y G  V+ SL+F +N    GPFG+  GT F+  ++G LV GF G+SG+Y+D+IG Y+  +
Sbjct:  209 NDIGVEKKVEIDGNL----------EHLKSISGTYGN--YKGFEVVTSLSFITNVTKHGPFGIASGTSFSIPIEGSLVTGFHGKSGYYLDSIGIYVKPR 295          
BLAST of DR908993 vs. ExPASy Swiss-Prot
Match: MB11_ARATH (Myrosinase-binding protein-like At1g52030 OS=Arabidopsis thaliana GN=F-ATMBP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 2
Query:   11 VTAEKHGGVGGNRTAEIKLRFPEEFLISVSGHYCPVVYGGSPVIRSLTFKSNKRTFGPFGVEEGTPFTFSMDGGLVVGFKGRSGWYVDAIGFY 289
            +  ++HG      T   +L +P E++ SV G+Y  +    + V+ SLTFK+NKRT  PFG+  G  F  + DG  +VGF G++G  V  IG +
Sbjct:  538 ILGDRHGKQTLLGTETFELDYPSEYITSVEGYYDKIFGVEAEVVTSLTFKTNKRTSQPFGMTAGEHFELNEDGYKIVGFHGKAGDLVHQIGVH 630          
The following BLAST results are available for this feature:
BLAST of DR908993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LECA_MACPO5.262e-1947.47Agglutinin alpha chain OS=Maclura pomifera PE=1 SV... [more]
LECA_CASCR8.975e-1950.00Agglutinin OS=Castanea crenata PE=1 SV=1[more]
LECA_ARTIN1.296e-1744.44Agglutinin alpha chain OS=Artocarpus integer PE=1 ... [more]
LEC_PARPC1.388e-1145.00Mannose/glucose-specific lectin (Fragment) OS=Park... [more]
MB11_ARATH4.038e-1137.63Myrosinase-binding protein-like At1g52030 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_17121 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908993 ID=DR908993; Name=DR908993; organism=Citrus sinensis; type=EST; length=553bp
GGGCAACCCTGTCACAGCAGAAAAACATGGAGGAGTCGGAGGCAATCGGA
CAGCTGAGATAAAGCTTCGATTCCCAGAAGAATTCTTGATCAGTGTTAGC
GGCCACTACTGTCCTGTCGTCTATGGTGGCAGCCCTGTGATCAGATCCCT
AACATTTAAGAGCAACAAAAGAACCTTCGGTCCTTTCGGAGTTGAAGAAG
GAACCCCATTTACTTTCTCAATGGATGGAGGACTGGTTGTTGGTTTTAAG
GGAAGGAGTGGCTGGTATGTCGATGCAATCGGTTTCTATTTGTCTAAGAA
ACAATCATCAAAGCTCCTTCAAAGGGTCCAAAAAGGGCTTCAAAGGCTTG
CAAGCACAACTGCGAAGTCGTCTGCCACCAAGGATGGTGGAAAAGCCCAT
TAGATAGAGGCTAATACCTCGACAATAAAGTTGATACTGCTGATGTATTA
TTACGAACAAATACTTAGAATTATGAGCGCTCCTGCTAGAGTTTTATGTA
TTGGGTCCTCGAATTTTCTTAACATATCACGTCTTCATTACAGAAAAAAA
AAA
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