DR908987

Overview
NameDR908987
Unique NameDR908987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_CITSI (30S ribosomal protein S19, chloroplastic OS=Citrus sinensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.613e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    5 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_EUCGG (30S ribosomal protein S19, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.291e-45
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    5 LKKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_CARPA (30S ribosomal protein S19, chloroplastic OS=Carica papaya GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.523e-45
Identity = 84/88 (95.45%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    5 LKKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_PLAOC (30S ribosomal protein S19, chloroplastic OS=Platanus occidentalis GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.121e-44
Identity = 83/88 (94.32%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKI+KLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:    5 LKKNPFVANHLLRKIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTMNFRGHAKNDNRSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_FAGEA (30S ribosomal protein S19, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.172e-44
Identity = 80/88 (90.91%), Postives = 87/88 (98.86%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRK+DKLNTK EKEII+TWSRASTIIPTM+GHTIAIHNGREHLP+YITDRM+GHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    5 LKKNPFVANHLLRKLDKLNTKEEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMIGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_SPIOL (30S ribosomal protein S19 alpha, chloroplastic OS=Spinacia oleracea GN=rps19 PE=1 SV=4)

HSP 1 Score: 176.407 bits (446), Expect = 8.061e-44
Identity = 82/88 (93.18%), Postives = 87/88 (98.86%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKI+KLN KAEKEII+TWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    5 LKKNPFVANHLLRKIEKLNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_SOYBN (30S ribosomal protein S19, chloroplastic OS=Glycine max GN=rps19 PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 8.061e-44
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKI+KLNTKAEK+IIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    5 LKKNPFVANHLLRKINKLNTKAEKDIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_GOSHI (30S ribosomal protein S19, chloroplastic OS=Gossypium hirsutum GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.061e-44
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    5 LKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_GOSBA (30S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.061e-44
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    5 LKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of DR908987 vs. ExPASy Swiss-Prot
Match: RR19_PHAVU (30S ribosomal protein S19, chloroplastic OS=Phaseolus vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.375e-43
Identity = 81/88 (92.05%), Postives = 88/88 (100.00%), Query Frame = 3
Query:   75 LKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 338
            LKKNPFVANHLLRKI+KLNTKAEK+II+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    5 LKKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of DR908987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CITSI8.613e-46100.0030S ribosomal protein S19, chloroplastic OS=Citrus... [more]
RR19_EUCGG7.291e-4596.5930S ribosomal protein S19, chloroplastic OS=Eucaly... [more]
RR19_CARPA9.523e-4595.4530S ribosomal protein S19, chloroplastic OS=Carica... [more]
RR19_PLAOC2.121e-4494.3230S ribosomal protein S19, chloroplastic OS=Platan... [more]
RR19_FAGEA6.172e-4490.9130S ribosomal protein S19, chloroplastic OS=Fagopy... [more]
RR19_SPIOL8.061e-4493.1830S ribosomal protein S19 alpha, chloroplastic OS=... [more]
RR19_SOYBN8.061e-4493.1830S ribosomal protein S19, chloroplastic OS=Glycin... [more]
RR19_GOSHI8.061e-4493.1830S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_GOSBA8.061e-4493.1830S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_PHAVU1.375e-4392.0530S ribosomal protein S19, chloroplastic OS=Phaseo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17115 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-26_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908987 ID=DR908987; Name=DR908987; organism=Citrus sinensis; type=EST; length=554bp
ATTTTTTTCTTCGTTTTTACAATTTACAAAAAAAAAAGAAAAAAATAGGA
GTTAATTAACTGTGACACGTTCACCTAAAAAAAAATCCTTTTGTAGCGAA
TCATTTATTAAGAAAAATCGATAAGCTTAATACAAAAGCGGAAAAAGAAA
TAATAATAACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGC
CATACTATTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAAC
AGATCGTATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATT
TCCGTGGACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAA
TATAGATTCATTGGTGAGAGGTGAACCTTATGATAAGGATAATAAAGAAG
AAGGGAGAAGTATCTGCTTTAGGTCAACATATATTGTATGTCTGCTCACA
AAGCCCGAAGGGTAATTGATCAGATTCGGGGACGTTCTTACGAGGAAACC
CTTATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCCATTTTAAA
TTGG
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