DR908984

Overview
NameDR908984
Unique NameDR908984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.995e-26
Identity = 74/156 (47.44%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    1 LLKNKFGFDDAFNYKKEPDLDAAS*EVLS*RHRHLFRKCWG*DA*CSPTQHENSWPHRR-----MRNDLTVQP*EA*RRTQLDASSWKTNSMEGFLAGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVAPE 453
            LLK KFGFDDAFNYK+E DL AA            F    G           N  PH R     M +   ++  E      L    +K   ++GF+  DFY +YPKFLELV+P IKEGK+ YVED+A+GLEKAP ALVG+F G+NVGKQ+VV+A E
Sbjct:  193 LLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGK---MLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHN--LSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVIARE 343          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.881e-25
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    8 RTSLGLMMLLTIRKSQTWMQPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVVGKRIPWKGFL 274
            +T  G       ++       LKRCFP GIDIYFENVGGKMLDAVL+NM +HGRIAVCGMISQYNLE  EGVHNL  ++ KRI  +GF+
Sbjct:  197 KTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFV 285          

HSP 2 Score: 110.153 bits (274), Expect = 7.095e-24
Identity = 70/153 (45.75%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    1 LLKNKFGFDDAFNYKKEPDLDAAS*EVLS*RHRHLFRKCWG*--DA*CSPTQHENSWPHRRMRNDLTVQP*EA*RRTQLDASSWKTNSMEGFLAGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVAPE 453
            LLK KFGFDDAFNYK+E DL AA            F    G   DA               M +   ++  E      L    +K   ++GF+  DFY +Y KFLE V+P I+EGK+ YVED+A+GLEKAP ALVG+F G+NVGKQ+VVVA E
Sbjct:  195 LLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHN--LSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.611e-23
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   47 KSQTWMQPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKPEGVHNLMQVVGKRIPWKGFL 274
            K ++  + L R  P+GIDIYFENVGG+ +DAVL NM + GRI  CG ISQYN   P  V NL  V+ K +  +GF+
Sbjct:  213 KKESPFKALPRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFI 288          

HSP 2 Score: 52.7582 bits (125), Expect = 1.611e-23
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  247 KTNSMEGFLAGDFYHQYPK-FLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVAPE 453
            K+ +++GF+  +   QY + + E +   I EGK+ Y  D+ +GLE AP A +G+  G+N GK +V +A E
Sbjct:  280 KSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKIADE 349          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 4.886e-18
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:   65 QPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYN-LEKPEGVHNL----MQVVGKRIPWKGFL 274
            + L +  P+GIDIY+ENVGGK+ DAVL  +    RI VCG++S YN  E P G   L      V+ KRI  +GF+
Sbjct:  209 EQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFI 283          

HSP 2 Score: 48.9062 bits (115), Expect = 4.886e-18
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  259 MEGFL-AGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVA 447
            ++GF+ A D+ H+  +F   +   +KE K+ Y E+I +GLE AP   +G+  G+N GK ++ VA
Sbjct:  279 LQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVA 342          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.990e-17
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  247 KTNS-MEGFLAGDFYHQYPKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLVVVA 447
            KT S M+GF+  D+  ++ +  + +   +K GKL Y E I EG E  P A +G+F G+N GKQL+ V+
Sbjct:  269 KTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVS 336          

HSP 2 Score: 52.373 bits (124), Expect = 3.990e-17
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 2
Query:   71 LKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLE 208
            L+   P+G+D+YF+NVGG + DAV+  +    RI VCG IS YN E
Sbjct:  208 LQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAE 253          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 5.500e-16
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   17 LGLMMLLTIRKSQTWMQPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKP 214
            LG  +    +  ++  + L+   P+G D YF+NVGG+  + V+L M+  GRIA+CG ISQYN   P
Sbjct:  185 LGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQYNRTGP 250          

HSP 2 Score: 45.0542 bits (105), Expect = 5.500e-16
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  259 MEGFLAGDFYHQY-PKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 438
            MEGF+   +  +   K L  +M  + EGK+ Y E I EG EK P+A +G+  G N+GK +V
Sbjct:  267 MEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYITEGFEKMPAAFMGMLKGDNLGKTIV 327          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 7.122e-16
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 2
Query:   65 QPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKP 214
            + LK+  PEG D YF+NVGG+  +AV   M+  GRIA+CG IS YN   P
Sbjct:  201 ETLKKASPEGYDCYFDNVGGEFSNAVTSQMKKFGRIAICGAISTYNRTGP 250          

HSP 2 Score: 42.3578 bits (98), Expect = 7.122e-16
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 1
Query:  301 KFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 438
            K L  ++  + EGK+ Y E I EG E  P+A +G+  G+N+GK +V
Sbjct:  282 KALRDLLKWVSEGKIQYHEHITEGFENMPAAFMGMLKGENLGKAIV 327          

HSP 3 Score: 24.6386 bits (52), Expect = 7.122e-16
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1
Query:   13 KFGFDDAFNYKKEPDLD 63
            K+GFD AFNYK    L+
Sbjct:  184 KYGFDVAFNYKTIESLE 200          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 7.149e-16
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   17 LGLMMLLTIRKSQTWMQPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKP 214
            LG  +    +  ++  + L+   P+G D YF+NVGG+  +AV+L M+  GRIA+CG ISQYN   P
Sbjct:  185 LGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYNRTGP 250          

HSP 2 Score: 43.1282 bits (100), Expect = 7.149e-16
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  259 MEGFLAGDFYHQY-PKFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 438
            MEGF+   +  +   K L  +M  + EGK+   E + EG EK P+A +G+  G+N+GK +V
Sbjct:  267 MEGFIVNRWQGEVRQKALTELMNWVSEGKVQCHEYVTEGFEKMPAAFMGMLKGENLGKTIV 327          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.154e-14
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 2
Query:   20 GLMMLLTIRKSQTWMQPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKP 214
            G  + L  +  ++  + LK   PEG D YF+NVGG+  +  +  M+  GRIA+CG IS YN   P
Sbjct:  186 GFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYNRTSP 250          

HSP 2 Score: 43.1282 bits (100), Expect = 2.154e-14
Identity = 18/46 (39.13%), Postives = 29/46 (63.04%), Query Frame = 1
Query:  301 KFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 438
            K L  ++  + EGK+ Y E + EG E  P+A +G+  G+N+GK +V
Sbjct:  282 KALRDLLKWVSEGKIQYHEHVTEGFENMPAAFIGLLKGENLGKAIV 327          
BLAST of DR908984 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 7.974e-14
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   17 LGLMMLLTIRKSQTWMQPLKRCFPEGIDIYFENVGGKMLDAVLLNMRIHGRIAVCGMISQYNLEKP 214
            LG  ++   +  ++  + LK+  P+G D YF+NVGG+  + V+  M+  GRIA+CG IS YN   P
Sbjct:  185 LGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGP 250          

HSP 2 Score: 40.4318 bits (93), Expect = 7.974e-14
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 1
Query:  301 KFLELVMPAIKEGKLVYVEDIAEGLEKAPSALVGIFTGQNVGKQLV 438
            K L+ ++  + EGK+ Y E I EG E  P+A +G+  G N+GK +V
Sbjct:  282 KALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIV 327          
The following BLAST results are available for this feature:
BLAST of DR908984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
P2_ARATH1.995e-2647.44Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH2.881e-2561.80Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO1.611e-2351.32Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI4.886e-1846.67Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU3.990e-1741.18Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RAT5.500e-1640.91Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_PIG7.122e-1652.00Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_MOUSE7.149e-1642.42Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN2.154e-1440.00Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_HUMAN7.974e-1439.39Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17112 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908984 ID=DR908984; Name=DR908984; organism=Citrus sinensis; type=EST; length=554bp
CTGTTGAAGAACAAGTTTGGGTTTGATGATGCTTTTAACTATAAGAAAGA
GCCAGACTTGGATGCAGCCTCTTAAGAGGTGCTTTCCTGAAGGCATCGAC
ATCTATTTCGAAAATGTTGGGGGTAAGATGCTTGATGCAGTCCTACTCAA
CATGAGAATTCATGGCCGCATCGCCGTATGCGGAATGATCTCACAGTACA
ACCTTGAGAAGCCTGAAGGCGTACACAACTTGATGCAAGTAGTTGGAAAA
CGAATTCCATGGAAGGGTTTCTTGCCGGTGATTTCTACCACCAATATCCG
AAATTCTTGGAACTGGTTATGCCGGCAATCAAAGAAGGAAAGTTAGTATA
TGTCGAGGACATAGCTGAAGGCCTGGAGAAAGCTCCATCAGCCCTAGTTG
GGATATTCACTGGGCAGAATGTTGGAAAACAACTGGTTGTAGTTGCTCCT
GAATGATATGATTACAATATGCTTTAAAAGTGGACTGTGCCATGCACTTT
AAAAGCTTAGTGAAGATGCCTCTGTCTTATTTTTGATACATGTTATGTTT
GTTT
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