DR908981

Overview
NameDR908981
Unique NameDR908981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 5.751e-58
Identity = 111/131 (84.73%), Postives = 114/131 (87.02%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 394
            SKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   50 SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 5.751e-58
Identity = 111/131 (84.73%), Postives = 114/131 (87.02%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 394
            SKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   50 SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.510e-58
Identity = 112/131 (85.50%), Postives = 113/131 (86.26%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQNI 394
            SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                 IQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:   50 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.416e-56
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 388
            SKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   50 SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.416e-56
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKSQ 388
            SKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   50 SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.061e-44
Identity = 82/127 (64.57%), Postives = 102/127 (80.31%), Query Frame = 2 
Query:    5 KARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNKS 385
            +AR+TVRSF IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFSDTG FGFGIQEHIDLG+KYDPSTGIYGMDF+V LE                 ++H+VTKEDA+KWFQ +++GV+LNK+
Sbjct:   41 RARFTVRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNKA 167
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.063e-43
Identity = 87/126 (69.05%), Postives = 96/126 (76.19%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILN 379
            SKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:   56 SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.195e-41
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 376
            SKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:   51 SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.195e-41
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 376
            SKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:   51 SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
[Close]
BLAST of DR908981 vs. ExPASy Swiss-Prot
Match: RL11_MOUSE (60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4)

HSP 1 Score: 168.318 bits (425), Expect = 2.195e-41
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 2 
Query:    2 SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 376
            SKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFSDTG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                   +HR++KE+AM+WFQ KY+G+IL
Sbjct:   51 SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of DR908981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL112_ARATH5.751e-5884.7360S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH5.751e-5884.7360S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_MEDSA7.510e-5885.5060S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL11_ORYSJ2.416e-5683.7260S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI2.416e-5683.7260S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_CHLRE8.061e-4464.5760S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]
RL11_DROME3.063e-4369.0560S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_RAT2.195e-4165.6060S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB2.195e-4165.6060S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]
RL11_MOUSE2.195e-4165.6060S ribosomal protein L11 OS=Mus musculus GN=Rpl11... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_17109 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908981 ID=DR908981; Name=DR908981; organism=Citrus sinensis; type=EST; length=555bp
CTCCAAGGCGAGATACACTGTGAGGTCATTCGGAATCAGGCGTAACGAGA
AGATTGCTTGTTACGTTACGGTTAGAGGAGACAAGGCAATGCAGCTTCTG
GAGAGCGGTTTGAAGGTCAAGGAGTACGAGCTCCTGCGGCGTAACTTCAG
CGATACCGGCTGCTTCGGCTTTGGCATTCAGGAGCACATCGATCTCGGAA
TCAAGTATGACCCTTCCACAGGTATTTATGGCATGGACTTCTTTGTTGTC
CTTGAACGCCCTGGATACCGTGTTGGTCGTCGCCGCAGATGCAAGTCTCG
CGTTGGCATCCAACATAGAGTTACAAAGGAGGATGCCATGAAATGGTTTC
AAGTGAAATATGAAGGAGTTATCCTTAACAAGTCCCAAAACATTGGTGCT
TAAGGCGATCTTTGAAACCTGTTGAGTTTTTTTTTTTCCCTTAAGTTTTG
GGCAGCTGCCCGATTTTTGTTTATTAGAATCTATATTTTCCTTTGGAGTT
TTGAGTTGGTGGATTTTTTTAAGCACAATTTGCCGTGGTTGCCCTGTTCT
TTTAA
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