DR908944

Overview
NameDR908944
Unique NameDR908944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908944 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   73 MAKAQGAQLFVSRLSSYITTKEFKALFSRFGVVTDAKLITDPKTQRPKGFGFITFQSEDDAQKALKTMDGRIVNGRLIFVEVAKSRS 333
            MA  +G +LFV  LS     +  + +FS++G +++  ++ D +TQR +GFGF+TF++ DDA+ A+  M+G+ V+GR I V+ A   S
Sbjct:    1 MASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 86
[Close]
BLAST of DR908944 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   73 MAKAQGAQLFVSRLSSYITTKEFKALFSRFGVVTDAKLITDPKTQRPKGFGFITFQSEDDAQKALKTMDGRIVNGRLIFVEVAKSRS 333
            MA  +G +LFV  LS     +  + +FS++G +++  ++ D +TQR +GFGF+TF++ DDA+ A+  M+G+ V+GR I V+ A   S
Sbjct:    1 MASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 86
The following BLAST results are available for this feature:
BLAST of DR908944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CIRBP_PONAB9.239e-1139.08Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN9.239e-1139.08Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_17072 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908944 ID=DR908944; Name=DR908944; organism=Citrus sinensis; type=EST; length=560bp
GATGAGAAGCCTAGCCGCTTTAACTTAGGAGGGAACCCGTCCGCTGTTTG
GGCCATAGAAGAAGCAGCGATTATGGCGAAAGCACAAGGCGCGCAACTCT
TCGTCAGCAGGTTGTCGTCGTACATCACAACTAAAGAATTCAAAGCTTTG
TTTTCGCGGTTTGGTGTCGTTACGGATGCTAAGCTAATAACGGACCCAAA
GACTCAAAGACCGAAGGGGTTTGGCTTTATCACATTTCAGTCAGAGGATG
ATGCACAGAAAGCATTAAAGACCATGGATGGCAGGATTGTGAATGGGAGG
CTGATCTTTGTTGAGGTTGCAAAGAGTAGAAGTCCTGGAACGGATGCCAG
CCCTTGAAAATTAAGCAGTTTTGACTATGTCAGTCCTTATTATATCTGTT
TTTAGCTTCGGCAACCAAAAATAGTGTGTAACATGTGATAGGTTTTATCA
CATGGCAGCCTGTATGATATCCGAGATGTAATCAAATGGCTGCCTGTCAA
CCTGTGTGTCATATGAGATCAAATTGAAATTAACATTTTTTTTAAAAAAA
AAAAAAAAAA
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