CN189875

Overview
NameCN189875
Unique NameCN189875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.296e-80
Identity = 148/201 (73.63%), Postives = 165/201 (82.09%), Query Frame = -1
Query:  164 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 748
            I KVPLF          ICDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATF C+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR R RTRG  I      V+EN  EGN   RL++YAAMFMSIRPHDHLE
Sbjct:  526 INKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 97/201 (48.26%), Postives = 134/201 (66.67%), Query Frame = -1
Query:  176 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR----------MRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPH 748
            +++VPLF          ICDRV+ L+++K E I +EGD V RM+F+VRG ++  Q L  G+ +  +L PG F GDELLSWCLRRPF++RLP SS+T   +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARYYS  WRTWAAV +Q AWRRY+          +R R P+      GE    ++L  YAA+  S +P+
Sbjct:  491 VRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGE----DKLRLYAAILTSPKPN 687          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28
Identity = 65/185 (35.14%), Postives = 105/185 (56.76%), Query Frame = -1
Query:  200 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAA 748
            +++VPLF          IC+R+   + ++   I+REGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP+S+ T   +E +EAF L A +L+++ + FR +  +++L+ T RYYS  WRTWAA  +Q AWRRY+ +     +S+ E+    +    +  AA
Sbjct:  476 VRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAA 659          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28
Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = -1
Query:  230 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY-RMRTRGPVISVTENGEGN 748
            +++VPLF          IC+R++P +Y++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+YS  WRTWAA+ IQ AWRRY + +    +    E GEG+
Sbjct:  508 VRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQLRKEEEEGEGS 682          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27
Identity = 62/173 (35.84%), Postives = 101/173 (58.38%), Query Frame = -1
Query:  236 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 748
            +++VPLF          IC+R++P ++++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWA+  IQ AWRRY  R    +  + E  E
Sbjct:  497 VRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = -1
Query:  275 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 748
            +++VPLF          IC+R++P +Y++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T   +  +EAF L+A+ L+++   FR +  + ++++T R+YS  WRTWAA  IQ AWRR+  R
Sbjct:  503 VRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 61/162 (37.65%), Postives = 96/162 (59.26%), Query Frame = -1
Query:  269 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 748
            +++VPLF          IC+R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F GDELL+W L       LP+S+ T   +  +EAF L A  L+++   FR +  + +++ T R+YS  WRTWAA  +Q AWRRY  R +
Sbjct:  509 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = -1
Query:  284 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY 748
            + +VP+F          +CDR++P++Y+++  I+REGDPV  M+FI+RG++    +     G + +  L  G F G+ELL+W L       LP S+ T   +  +EAF L A +L+++   FR +  +++L+ T RYYS  W+TWAA  IQ AWRRY
Sbjct:  481 LMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.105e-26
Identity = 62/176 (35.23%), Postives = 102/176 (57.95%), Query Frame = -1
Query:  227 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNE 748
            +++VP F          IC+R+   + ++   ++REGD +  M+FI+RGR++   +     G   + +L PG F G+ELLSW L       LP+S+ T   +  +EAF L A++L+++ + FR +  +++L+ T R+YS +WRTWAA  IQ AWRRY+ R     ++  E+ E  E
Sbjct:  476 VRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMENEE 650          
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 60/162 (37.04%), Postives = 96/162 (59.26%), Query Frame = -1
Query:  269 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 748
            +++VPLF          IC R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T   +  +EAF L ++ L+++   FR +  + +++ T R+YS  WRTWAA  IQ AWRRY  R +
Sbjct:  493 VRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653          
The following BLAST results are available for this feature:
BLAST of CN189875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC2_ARATH3.296e-8073.63Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH1.351e-4948.26Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG14_ARATH2.928e-2835.14Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC9_ARATH6.523e-2836.93Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC7_ARATH1.453e-2735.84Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH4.228e-2738.13Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH5.522e-2737.65Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC1_ARATH5.522e-2738.22Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNG17_ARATH6.105e-2635.23Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNGC5_ARATH7.973e-2637.04Probable cyclic nucleotide-gated ion channel 5 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189875 ID=CN189875; Name=CN189875; organism=Citrus sinensis; type=EST; length=748bp
GACGTTTTTTTTTAGGAAAGAATTTCCCCCCCTTTTTCTTTTATTTCAAA
TCCAATTGTCTAAATCGAGTACAAGTTCGATGTTCCATGGCTAAATTGCT
ACCCAAAGAAAAGAAAAGAAACTTCATTCATCAATGGAAGAATTGCACGA
CACGGTGTGCTTATTCAAGGTGATCATGTGGTCTAATTGACATGAACATA
GCAGCATATCTCATAAGTCTGTTGCTCTCATTGCCTTCTCCATTTTCAGT
TACAGAAATCACAGGACCTCTAGTCCTCATCCTGTATCTTCTCCAAGCAA
ATTGAATATTCACAGCCGCCCATGTCCTCCAATTTGATGAATAATATCTC
GCGGTTCTCTTCAGCCTTTCGTTGGCAAATTTGTACCGGAAATGATCTGT
GATGTATCGGAGATTCTTTGCATCTAACCCAAATGCTTCTATGGATTCCA
TACAAAAAAATGTTGCTGATGATGCTGGCAGCCGATCGATAAACGGGCGG
CGCAGGCACCAGGAAAGCAACTCATCACCCAGAAACCCTCCTGGTTCAAG
CACACTTGTTGCTACCATGCCTTTGCTTAGGCTTTGGCAACGTTTAATCC
GTCCACGAACAATGAACACCATTCTTGGCACAGGATCCCCTTCTCTGATT
ATCTTTTCATCTTTAGAGTATACAAGGGGCCTAACTCTGTCACATATGTT
GTCAAGAATGAGATCATCCAGGTTGTGGAACAAAGGTACCTTTTTTAT
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