CN189875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 3.296e-80 Identity = 148/201 (73.63%), Postives = 165/201 (82.09%), Query Frame = -1 Query: 164 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 748 I KVPLF ICDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATF C+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQ AWRR R RTRG I V+EN EGN RL++YAAMFMSIRPHDHLE Sbjct: 526 INKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49 Identity = 97/201 (48.26%), Postives = 134/201 (66.67%), Query Frame = -1 Query: 176 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR----------MRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPH 748 +++VPLF ICDRV+ L+++K E I +EGD V RM+F+VRG ++ Q L G+ + +L PG F GDELLSWCLRRPF++RLP SS+T +E+ EAFGLDA++++Y+T HFRY F NE++KR+ARYYS WRTWAAV +Q AWRRY+ +R R P+ GE ++L YAA+ S +P+ Sbjct: 491 VRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGE----DKLRLYAAILTSPKPN 687
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.928e-28 Identity = 65/185 (35.14%), Postives = 105/185 (56.76%), Query Frame = -1 Query: 200 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAA 748 +++VPLF IC+R+ + ++ I+REGDPV M+FI+RG+++ + G + L PG F G+ELL+W L LP+S+ T +E +EAF L A +L+++ + FR + +++L+ T RYYS WRTWAA +Q AWRRY+ + +S+ E+ + + AA Sbjct: 476 VRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFR-RLHSKKLQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAA 659
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28 Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = -1 Query: 230 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY-RMRTRGPVISVTENGEGN 748 +++VPLF IC+R++P +Y++ ++REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T + +EAF L A L+++ FR + + +++ T R+YS WRTWAA+ IQ AWRRY + + + E GEG+ Sbjct: 508 VRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQLRKEEEEGEGS 682
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27 Identity = 62/173 (35.84%), Postives = 101/173 (58.38%), Query Frame = -1 Query: 236 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGE 748 +++VPLF IC+R++P ++++ I+REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T + +EAF L+A+ L+++ FR + + ++++T R+YS WRTWA+ IQ AWRRY R + + E E Sbjct: 497 VRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWASCFIQAAWRRYSRRKNAELRRIEEKEE 668
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = -1 Query: 275 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 748 +++VPLF IC+R++P +Y++ I+REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T + +EAF L+A+ L+++ FR + + ++++T R+YS WRTWAA IQ AWRR+ R Sbjct: 503 VRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFVASQFR-RLHSRQVQQTFRFYSQQWRTWAACFIQAAWRRHLRR 661
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27 Identity = 61/162 (37.65%), Postives = 96/162 (59.26%), Query Frame = -1 Query: 269 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 748 +++VPLF IC+R++P ++++ ++REGDPV M+FI+RGR++ + G S+L+ G F GDELL+W L LP+S+ T + +EAF L A L+++ FR + + +++ T R+YS WRTWAA +Q AWRRY R + Sbjct: 509 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR-RLHSRQVQHTFRFYSQQWRTWAACFMQAAWRRYIKRKK 669
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27 Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = -1 Query: 284 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY 748 + +VP+F +CDR++P++Y+++ I+REGDPV M+FI+RG++ + G + + L G F G+ELL+W L LP S+ T + +EAF L A +L+++ FR + +++L+ T RYYS W+TWAA IQ AWRRY Sbjct: 481 LMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.105e-26 Identity = 62/176 (35.23%), Postives = 102/176 (57.95%), Query Frame = -1 Query: 227 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNE 748 +++VP F IC+R+ + ++ ++REGD + M+FI+RGR++ + G + +L PG F G+ELLSW L LP+S+ T + +EAF L A++L+++ + FR + +++L+ T R+YS +WRTWAA IQ AWRRY+ R ++ E+ E E Sbjct: 476 VRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFR-RLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMENEE 650
BLAST of CN189875 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26 Identity = 60/162 (37.04%), Postives = 96/162 (59.26%), Query Frame = -1 Query: 269 IKKVPLFHXXXXXXXXXICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTR 748 +++VPLF IC R++P ++++ ++REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T + +EAF L ++ L+++ FR + + +++ T R+YS WRTWAA IQ AWRRY R + Sbjct: 493 VRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFR-RLHSRQVQHTFRFYSHQWRTWAACFIQAAWRRYCKRKK 653 The following BLAST results are available for this feature:
BLAST of CN189875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189875 ID=CN189875; Name=CN189875; organism=Citrus sinensis; type=EST; length=748bpback to top |