CN189874

Overview
NameCN189874
Unique NameCN189874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189874 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = -3 
Query:  382 EAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMP-ETDKLAEFAKVLAKLRA 696
            E + AA+ Q +  L  LE AF +CSKGKPFFGG  +GF+D+  G YLGW    +K+I  +L+D  +TP L  W ERF A  A K V+P + DKL EF + L +  A
Sbjct:  127 EERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEFRQTLLRWSA 232
[Close]
BLAST of CN189874 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = -3 
Query:  397 SIGSADGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQI--GFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVL 720
            S+    GA A+ A  E     L LLE+AF   S G+ FF G     G LD+A GC+L  +R  E++  + L+D   TP L  W++RF A  A K V+P+T+K+ +F + L
Sbjct:  118 SLAPTPGARAQAA--EDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTRFL 225
The following BLAST results are available for this feature:
BLAST of CN189874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GSTU6_ORYSJ7.208e-2147.17Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX2_MAIZE3.243e-1339.09Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189874 ID=CN189874; Name=CN189874; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTCGAAAATCGTTAATTCTTGCCATTTGCCATGCG
GGAATTCCACCGTTACATAATACGATACCTTTTATAACAACGAATATGGC
ACGTAGCCCAGATGTGTACCGTATGTGGGAAAAAATTCTGCGGAGAAAAA
CAACACAATAACCTTTATACCTTCACTTGGTATACATGAGTCTACGAGAG
AGGCTGCAGCCTAGCCCGATAACAGAACCCAAATGATACAGGCTTTACCG
TTCCAAACGAAACCAAAAACAAAACTTAATTCTTATTCGAATTTATTTCT
GGAAACAACTCTTTTTTTTTTTTTCTTTTTTTTTGTGCCCCTCCAAGCAC
AAAATTAAGCTTCTTAATTCCATTTGCCAAAAGCTCTGAGTTTGGCAAGA
ACCTTAGCAAACTCTGCAAGCTTATCAGTCTCAGGCATAACATCTTTGAC
AGCGGCATCAGCACAGAATCTCTCAGCCCATTTGAACAGTCCAGGAGTTT
TGACTTCATCAAGGAGCTTCACCTCAATCATTTTCTCTGTCACTCTCACC
CATCCCAAGTAGCAACCAAATGCAATGTCAAGAAACCCAATTTGGCTTCC
ACCAAAAAAAGGCTTCCCTTTGCTACACTTAACAAAAGCATCCTCCAGCA
AAACCAAGCCTTCAATCAATTGCTCAATCGCAGCTTCCTTAGCTTCCGCT
CCATCTGCACTACCAATGCTTT
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