CN189870
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17 Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+A N+GR + ++AVAT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17 Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+A N+GR + ++AVAT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17 Identity = 56/187 (29.95%), Postives = 88/187 (47.06%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDGRLSVEK-----VALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+A N+GR + ++AVAT+ EL V K VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFENHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16 Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHV-----GANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + S+T +++E+ E ++ V L +D V+ +A+A N+GR + V+A+AT K + I+ + ++ +L V+ A GH +VW++ W+++ T LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGRSFHVLAIAT-KDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 312
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16 Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++A+AT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16 Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++A+AT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.223e-16 Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++A+AT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAHFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15 Identity = 53/187 (28.34%), Postives = 87/187 (46.52%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 VYE D + L W LQ E + C S ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++AVAT+ EL + + VA H +VW++ W+++GT LA++G DG VRLW++N W Sbjct: 141 VYEAPDVMNLSQWSLQHEVSCKL----------CCSC-ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15 Identity = 55/188 (29.26%), Postives = 89/188 (47.34%), Query Frame = -1 Query: 191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW--EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQ-----KGIAIWHVGANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733 +YE D + L W LQ E K +C + ISWNP +G D+ S KV E++E ++ L +D V+ +A+A N+GR + V+A+AT+ K + + AN + V+ +A H +VW++ W+++ T LA++G DG VRLW++N W Sbjct: 141 IYEAPDVMNLSQWSLQHEISC---------KLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKVQIHEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLLPLRRESANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 313
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12 Identity = 51/171 (29.82%), Postives = 80/171 (46.78%), Query Frame = -1 Query: 188 NAIDSVTMFRKASCISA-SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQ-KGIAIWHVGANPELDGRLSVEKVALLSGHGG-------EVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 673 NA+ S ISA S+ N N + V F S N+ K+WEF + NR++ V L + SD V VA+A N+G P +A A+Q + + IW + + ++ ++ + G VW++ W +SG LA + DG + LW+ NL G W+ Sbjct: 191 NAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCD-NTVKIWEFSQEANRFVEVEAL---QGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWE 357 The following BLAST results are available for this feature:
BLAST of CN189870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189870 ID=CN189870; Name=CN189870; organism=Citrus sinensis; type=EST; length=733bpback to top |