CN189870

Overview
NameCN189870
Unique NameCN189870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P +    +++E++E   ++     L      SD V+ +A+A N+GR + ++AVAT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P +    +++E++E   ++     L      SD V+ +A+A N+GR + ++AVAT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 56/187 (29.95%), Postives = 88/187 (47.06%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDGRLSVEK-----VALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P +    +++E++E   ++     L      SD V+ +A+A N+GR + ++AVAT+            EL     V K     VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVATKDVRIFTMKPLRKELSSSGGVTKFENHTVAQFDNHNSQVWRVSWNITGTVLASSGDDGTVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16
Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHV-----GANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G + S+T      +++E+ E   ++  V  L      +D V+ +A+A N+GR + V+A+AT K + I+ +      ++     +L V+  A   GH  +VW++ W+++ T LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGRSFHVLAIAT-KDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 312          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P   +  +++E++E   ++     L      +D V+ +A+A N+GR + ++A+AT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P   +  +++E++E   ++     L      +D V+ +A+A N+GR + ++A+AT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.223e-16
Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P   +  +++E++E   ++     L      +D V+ +A+A N+GR + ++A+AT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAHFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 53/187 (28.34%), Postives = 87/187 (46.52%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQKGIAIWHVGANPELDG-----RLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            VYE  D + L  W LQ E    +          C S  ISWNP           +G +  +P  +   +++E++E   ++     L      +D V+ +A+A N+GR + ++AVAT+            EL       +  +  VA    H  +VW++ W+++GT LA++G DG VRLW++N    W
Sbjct:  141 VYEAPDVMNLSQWSLQHEVSCKL----------CCSC-ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 55/188 (29.26%), Postives = 89/188 (47.34%), Query Frame = -1
Query:  191 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW--EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQ-----KGIAIWHVGANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 733
            +YE  D + L  W LQ E            K +C  + ISWNP           +G   D+    S KV   E++E   ++     L      +D V+ +A+A N+GR + V+A+AT+     K + +    AN     +  V+ +A    H  +VW++ W+++ T LA++G DG VRLW++N    W
Sbjct:  141 IYEAPDVMNLSQWSLQHEISC---------KLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKVQIHEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLLPLRRESANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNW 313          
BLAST of CN189870 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 51/171 (29.82%), Postives = 80/171 (46.78%), Query Frame = -1
Query:  188 NAIDSVTMFRKASCISA-SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVATQ-KGIAIWHVGANPELDGRLSVEKVALLSGHGG-------EVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 673
            NA+         S ISA S+  N     N  +  V  F S     N+ K+WEF +  NR++ V  L   +  SD V  VA+A N+G P   +A A+Q + + IW   +      + ++  ++  +  G         VW++ W +SG  LA +  DG + LW+ NL G W+
Sbjct:  191 NAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCD-NTVKIWEFSQEANRFVEVEAL---QGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWE 357          
The following BLAST results are available for this feature:
BLAST of CN189870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SEH1_XENTR2.239e-1728.88Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1A_XENLA2.239e-1728.88Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1B_XENLA2.924e-1729.95Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1_OSMMO2.476e-1629.95Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_HUMAN3.233e-1627.81Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN3.233e-1627.81Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_PONAB4.223e-1627.81Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_MOUSE1.605e-1528.34Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE6.098e-1529.26Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEC13_USTMA2.169e-1229.82Protein transport protein SEC13 OS=Ustilago maydis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189870 ID=CN189870; Name=CN189870; organism=Citrus sinensis; type=EST; length=733bp
GAGGCTTAGATTTAATAAAGGTGACAGGAATGGTCCCAAGCTTCAATTAT
AACGAATGATACAGTCAATTATCCTACTCAGCAGCCAAAATTTGGTAGAA
AAAACTATTTTCCTTCCAAAATAATGTGCGACTAAAAGGAAATGATGCTG
GTTGGCACTAAGCAGTGGGTTGGAATGCAGCCTGTTCATCCCAAACGCCA
TTCAAGTTAGATTGCCATAACCTTACCATCCCATCACTTCCTGTTGTTGC
CAAGGTCGTCCCACTCATGTCCCATTCCATCTGCCACACCTCGCCTCCAT
GGCCAGAGAGCAATGCAACCTTCTCTACTGAGAGCCTTCCATCCAACTCG
GGGTTTGCTCCAACATGCCAAATGGCAATGCCCTTCTGAGTTGCAACAGC
TATCACCTCATATGGCCGGCCGATGTTTAGTGCCCATGCTACAGCATAAA
CCTCATCACTCCTGTCCTCAGGCAAAGCCAACTCTGCCACTGGTAGCCAT
CTATTATGAGCCTCATCAAACTCCCATACCTTGGAGGAATTGAGTTGTGG
TGTGTCTGAATTGAACCCGAGAACAAAACTAGATCCCTGGTTTTCACCCT
TCTGTGGATTCCAAGAAATGGATGCCGATATGCATGAAGCCTTCCTAAAC
ATAGTCACAGAATCAATAGCATTCTGAAATTCAGCCTGAAGTTGCCAATT
TTTCAGTATCAAGGGATCTAGGAGCTCATAAAC
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