CN189869

Overview
NameCN189869
Unique NameCN189869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81
Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = -3
Query:  179 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 688
            PSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ+ +GP +RRVG F+ GPPARSHS++ +EQG  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  238 PSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGAEVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEQGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.844e-80
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = -3
Query:  179 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 688
            P E AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH++PVEAGLTWAIGKRRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct:  239 PDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTWAIGKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.714e-80
Identity = 141/169 (83.43%), Postives = 154/169 (91.12%), Query Frame = -3
Query:  182 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 688
            PSE A+DLAKA+LEKSEGK+RLTGLGARDSLRLEAGLCLYGNDMEQH TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ++EGP +RRVGFF+ GPP RSHS++ D  G  IGEITSGGFSPCLKKNIAMGYVK+G HKAGT VKI +RGK+YDG +TKMPFVPTKYYKP
Sbjct:  238 PSENALDLAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDMEQHTTPVEAGLTWAIGKRRRAEGGFLGAEVILKQIEEGPKIRRVGFFSSGPPPRSHSEIQDSNGQNIGEITSGGFSPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDGVVTKMPFVPTKYYKP 406          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.851e-80
Identity = 140/170 (82.35%), Postives = 157/170 (92.35%), Query Frame = -3
Query:  179 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 688
            PSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  238 PSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.851e-80
Identity = 140/170 (82.35%), Postives = 157/170 (92.35%), Query Frame = -3
Query:  179 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 688
            PSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  238 PSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.195e-78
Identity = 138/170 (81.18%), Postives = 155/170 (91.18%), Query Frame = -3
Query:  179 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 688
            PSE  V+LAKA+LEKSEGK+RLTGLGARDSLRLEAGLCLYGND+EQH+TP+EAGLTWAIGKRRRAEGGFLGA+ ILKQL +GP +RRVGF + GPP RSHS++ DE GN IGE+TSGGFSPCLKKNIA+GYVKSGLHKAGTKVKI +RGK  +G +TKMPFVPTKYYKPS
Sbjct:  239 PSEHGVELAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPPRSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKQNEGVVTKMPFVPTKYYKPS 408          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.020e-77
Identity = 137/168 (81.55%), Postives = 152/168 (90.48%), Query Frame = -3
Query:  185 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 688
            P+E AVDLAKA+LEKSEGKVRLTG GARDSLRLEAGLCLYGND+EQH+TP+EAGLTWA+GKRRRAEGGFLGAE ILKQ+ +GPP RRVGF + GPPAR HS++ +E+G  IGEITSGGFSPCLKKNIAMGYVKSG HKAGTKV I VRGK Y+G +TKMPFVPTKYYK
Sbjct:  239 PNEYAVDLAKAMLEKSEGKVRLTGRGARDSLRLEAGLCLYGNDLEQHITPIEAGLTWAVGKRRRAEGGFLGAEVILKQIADGPPQRRVGFISSGPPARGHSEIQNEKGESIGEITSGGFSPCLKKNIAMGYVKSGNHKAGTKVNILVRGKPYEGVVTKMPFVPTKYYK 406          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.248e-43
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = -3
Query:  185 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 688
            P E +VD A  +L  ++ +VR  GLGARD+LRLEAG+CLYG+D++   +PVE  L+W IGKRRR EGGF+G+ +ILK+L +GP  RRVGF     PAR H    +  G  +G++TSG  SP L KNIAMGY+ +GLH+ GT   I+VR K +   + +MPFV T YYK
Sbjct:  223 PEEVSVDFASTLL--ADTRVRPIGLGARDTLRLEAGMCLYGSDIDDTTSPVEGSLSWIIGKRRRKEGGFVGSSRILKELKDGPSRRRVGFIVEKVPAR-HGSAVEVDGVEVGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNKLHPAQVVRMPFVETHYYK 387          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.168e-41
Identity = 90/167 (53.89%), Postives = 111/167 (66.47%), Query Frame = -3
Query:  188 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 688
            P+  AV LA A+LE  E  V+L GL ARDSLRLEAGLCLYG+D+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SPCLKKN+AMGYV S   + GT + +EVR K     ++KMPFV T YY
Sbjct:  236 PAAAAVRLAAALLENPE--VKLAGLAARDSLRLEAGLCLYGSDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIIAQLKGKVQRRRVGLTCEGAPVRAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYY 400          
BLAST of CN189869 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 88/167 (52.69%), Postives = 108/167 (64.67%), Query Frame = -3
Query:  188 PSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 688
            P+  AV LA A+L+  E  V+L GL ARDSLRLEAGLCLYGND+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+ S +   +G  IG +TSG  SPCLKKN+AMGYV     + GT + +EVR K     ++KMPFV T YY
Sbjct:  230 PAAEAVHLAAALLKNPE--VKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCPSPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394          
The following BLAST results are available for this feature:
BLAST of CN189869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 319
Match NameE-valueIdentityDescription
GCST_FLATR7.484e-8183.53Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_ARATH2.844e-8085.29Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_SOLTU3.714e-8083.43Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_FLAPR4.851e-8082.35Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN4.851e-8082.35Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA1.195e-7881.18Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_MESCR5.020e-7781.55Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_SCHPO1.248e-4352.38Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_CANFA1.168e-4153.89Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_BOVIN3.399e-4152.69Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189869 ID=CN189869; Name=CN189869; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTGCTTTAAGTAAACACTTTTATTCAGGCAACAAGAATCA
TAAGAATTTGCAGAATTAAAGAACTGCTAGCAATAAAGACAGTAATCTCG
AGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGAGTAGAGCTTC
CATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTAGTATTTTGTT
GGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTTTTCCTCGAAC
CTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGATTTTACATATC
CCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCCACTGGTAATT
TCTCCAATGGGATTCCCTTGCTCATCGTGAACCTTACTGTGTGATCTGGC
AGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGCGGACCTTCGT
CAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTC
CTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAGGTGTCACGTG
TTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCAAGTCGGAGAC
TGTCTCGAGCACCGAGACCTGTCAACCTCACCTTTCCTTCAGATTTCTCC
AGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
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