DR908920

Overview
NameDR908920
Unique NameDR908920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908920 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.139e-24
Identity = 54/151 (35.76%), Postives = 86/151 (56.95%), Query Frame = 3 
Query:    3 GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSEL--SSSQQTGACS 449
            GG+++V AE I   N   GI +KT IGRGG++++I V  + M+  +    + G+ G H D+ ++P A PV+ GI  +D+    V  +  ++G+ + PFTGIC+SN+ +   A     P  C+DV G +  V P PCS L     ++T  C+
Sbjct:  317 GGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCN 467
The following BLAST results are available for this feature:
BLAST of DR908920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI1.139e-2435.76Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_17048 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-38_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908920 ID=DR908920; Name=DR908920; organism=Citrus sinensis; type=EST; length=563bp
CGGGTGGAGTGGAAAATGTCTTGGCTGAACACATTAACCTTTACAATGTA
GGAGTTGGTATCCACGTTAAGACAAACATTGGTAGGGGAGGATTCATAAG
AAACATCACAGTCTCTGATGTATATATGGAAAACGCGCGCAAGGGGATAA
AGATTGCAGGTGATGTTGGTGACCACCCTGATGACAAGTTCAATCCGAAT
GCTCTCCCAGTAGTCAATGGTATCACAATTAAGGATGTCTGGGGAACGAA
GGTCCAACAATCGGGATTAATTCAAGGCTTGAAGAACTCTCCTTTCACTG
GGATCTGTCTTTCTAACATTAACCTACAAGGTGTGGCAGGACCAACATCT
CCTCCGTTAAAGTGCTCTGATGTAAGTGGATCTGCTTATCAGGTAAAACC
ATGGCCCTGTTCGGAACTGTCCAGCTCGCAGCAAACTGGTGCCTGTTCCA
ATCACTTCTGAGTTCATGTAATTTTTCATCTCAATTCAAACGAAGAATAA
AGATTCATGAGTAACCCAATTAATAATATAAACACCAGCTCATCCATTTC
GTAAAAAAAAAAA
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