CN189841

Overview
NameCN189841
Unique NameCN189841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189841 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  439 QLAGILVTVTVAANAFSFSRYRKKNLLPLRSPIDESADILASFNVEAEGEDEFFFGLATAPAHVEDRLNDAWLQFAEDEP 678
            ++AG+L TVTV AN  S+SR+R++NL   RSPIDES ++LA FN     E +FFFGLATAPAH ED L+DAWLQFA++ P
Sbjct:    9 KVAGLLATVTVGANVVSYSRFRRQNLAKFRSPIDESKEVLADFNSIEHEEGKFFFGLATAPAHAEDDLDDAWLQFAKETP 88          
BLAST of CN189841 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 57/111 (51.35%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  424 VCAATQLAGILVTVTVAANAFSFSRYRKKNLLPLRSPIDESADILASF------NVEAEGEDEFFFGLATAPAHVEDRLNDAWLQFA-EDEPRKKSYKEVLEPADALMGAA 735
            V AA +LA ++     AANA S++RYR+++L  + SPIDESAD LA F      + +   ED FFFGLATAPAHVEDRL DAWLQFA E             P DALM +A
Sbjct:    7 VAAAARLAVLVAAAATAANAASYARYRRRHLRRIPSPIDESADPLADFRAFPSSDADDSEEDNFFFGLATAPAHVEDRLEDAWLQFATETSCDDNGNVRDQRPVDALMASA 117          
BLAST of CN189841 vs. ExPASy Swiss-Prot
Match: UCR11_SOLTU (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 3
Query:   99 MLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEEK 251
            + KFL+PK R Q  D+QAAA WGVAAV+GAL++IQP+D+L+KTF+EK EE+
Sbjct:   11 LFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEEE 61          
The following BLAST results are available for this feature:
BLAST of CN189841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SFR2_ARATH6.778e-2261.25Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
SFR2_ORYSJ4.857e-2051.35Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
UCR11_SOLTU1.673e-1264.71Ubiquinol-cytochrome c reductase complex 6.7 kDa p... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002I03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189841 ID=CN189841; Name=CN189841; organism=Citrus sinensis; type=EST; length=737bp
GACCGTTTGACATTGGCATTCGACGAACAAAGATTTGGTGCATTAAAAAG
CTTGGTTAGGGTTTATAGATCCAAGAAGAAATGGCAGGCGAAGCTTCGAT
GTTGAAGTTTCTGAAGCCGAAGTCGCGTCTGCAACCCGTAGACGTACAGG
CCGCCGCCTTCTGGGGTGTTGCTGCTGTGTCCGGTGCTCTTTACCTCATC
CAACCATTTGATTGGTTGAAGAAGACCTTTTTGGAGAAGTCTGAAGAAAA
ATAAAATTGACGTTGACGATCCGGTGAAGCTTTTTGATGTCTGCTTTTGG
GTTGTGGATGAGAAGAACATGGACATATTTGTTCTGAAATAATGTAGTTT
CATTTTCTACTTCATGTCCTAAGGCCTTTTGGCATTTAACTTTTGAGAAT
ATTTGATTTGCTCAGACCCGCAAGTTTGTGCGGCGACGCAGCTCGCCGGA
ATCTTAGTGACGGTGACTGTGGCGGCGAACGCCTTCTCTTTTTCGCGTTA
TCGGAAAAAGAATCTCCTGCCGTTGCGGTCTCCAATTGACGAGTCTGCTG
ATATTCTGGCCTCCTTCAATGTCGAAGCGGAAGGGGAAGATGAGTTTTTC
TTCGGATTGGCTACGGCACCAGCACATGTTGAGGACAGACTTAATGATGC
TTGGCTTCAGTTTGCAGAAGACGAGCCAAGAAAGAAGTCATATAAGGAGG
TTTTGGAACCTGCAGATGCATTAATGGGTGCAGCTGC
back to top