CN189836 | Citrus Genome Database

Overview


Name	CN189836
Unique Name	CN189836
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	691

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CN189836 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = -2

Query:  439 KTLTGKTITLEVESRDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 651
            KTLTGKTITLEVES DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CN189836 vs. ExPASy Swiss-Prot

BLAST of CN189836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124


Match Name	E-value	Identity	Description
UBIQ_WHEAT	1.705e-32	98.59	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	1.705e-32	98.59	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	1.705e-32	98.59	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	1.705e-32	98.59	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	1.705e-32	98.59	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	1.705e-32	98.59	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	1.705e-32	98.59	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	1.705e-32	98.59	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	1.705e-32	98.59	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	1.705e-32	98.59	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0002I01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN189836 ID=CN189836; Name=CN189836; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTTTTTTTTTTTACCAATGAAAGTGAAAAATTTATTGGGTGCCTT
TACATCAGTGTAAGAAAATAGTAGATTCACGCAAGTTATAATAAAGTGCT
CAATGTCACGGCACATAGAGGCGAGTAATCAGTCTACAAATACTCTCAAA
ACCCTGGAAACATCTTGAAACAGAAATCACGTACTAAGTGACAACTATTA
CTGGGCAATAGTTGATGCTACATATTCTAGGCAAAACATCCTGTTTCAGT
ATAAAATGTAGCATTTCTCTGCAGAATATCTACTTGATCTTCTTCTTTGG
CCTTAGCTGGTTGCTGTGCCCACATTTCTTCTTCCTGCAGTTCACGGCAC
GGGGGTGCAGGCGTGCATAACATTTTCGGCAGATCATCTTGTCCTGGTTA
TACTTCCTTGCCAATGCCATCAAAGAAGGCTCAATAATACCGCCACGAAG
CCTCAGAACCAGATGCAGAGTTGACTCCTTTTGGATATTGTAATCGGCTA
GAGTACGGCCATCCTCAAGTTGCTTCCCAGCGAAGATAAGTCTCTGCTGG
TCCGGCGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGAT
GGTGTCCCTGGATTCGACCTCGAGGGTAATGGTCTTCCCCGTTAGGGTTT
TTCACGAAAGATCTGCATTTTTTTCCCCCTTTTTCTCCTCC