CN189824

Overview
NameCN189824
Unique NameCN189824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_HUMAN (Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.156e-35
Identity = 76/213 (35.68%), Postives = 133/213 (62.44%), Query Frame = 2
Query:    2 REKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFF 631
            +E+  L++ AE +Q KL YF+ELE I     SP ++V +  F  +L +LD+CI Y+  +P + +  +YLLKF+Q  S+AL +++++ ++ L++ +SQ+     SS  +  +       +L YV+F+AAA +++ ++E+IE RS K  EY Q+L + H+ Y +QR  L+   +   ++E + +      +L RSGCA+++ VCQ EHQL++ FF
Sbjct:  181 KEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSDGFIPMLAKLDDCITYISSHPNFKDYPIYLLKFKQCLSKALHLMKTYTVNTLQTLTSQLLKRDPSSVPNADNA-----FTLFYVKFRAAAPKVRTLIEQIELRSEKIPEYQQLLNDIHQCYLDQRELLLGPSIACTVAELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFF 388          
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_MOUSE (Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus GN=Cog3 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.518e-34
Identity = 75/213 (35.21%), Postives = 131/213 (61.50%), Query Frame = 2
Query:    2 REKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFF 631
            +E+  L + AE +Q KL YF+ELE I     SP ++V +  F  +L +LD+CI Y+  +P + +  VYLLKF+Q  S+AL +++++ ++ L++ ++Q+     SS  +  +       +L YV+F+AAA +++ ++E+IE RS K  EY  +L + H+ Y +QR  L+   +   ++E + +      +L RSGCA+++ VCQ EHQL++ FF
Sbjct:  173 KEQSELADLAEHIQQKLSYFNELETINTKLNSPTLSVNSEGFIPMLAKLDDCITYISSHPNFKDYPVYLLKFKQCLSKALHLMKTYTVNTLQTLTNQLLKRDPSSVPNADNA-----FTLFYVKFRAAAPKVRTLIEQIEQRSEKIPEYQHLLNDIHQCYLDQRELLLGPSIAYTVTELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFF 380          
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_AEDAE (Conserved oligomeric Golgi complex subunit 3 OS=Aedes aegypti GN=Cog3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.082e-30
Identity = 74/218 (33.94%), Postives = 128/218 (58.72%), Query Frame = 2
Query:    2 REKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEA--SLIYVRFKAAASELKPVLEEIESRSSKK-EYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFFPSS 640
            +++ +L E  E ++ +LKYF + E+I     +P  +V N  F  +L  +DEC+ Y+  NP ++E+  Y +K+R   S+A  M+R++V ++L +A++Q+    R    S+T + +G EA  +L Y +F+A+A  +K +   IE R  +  EY Q+L   H+ +   R +++   V+Q I + SKK      +L RS CA+++ VCQ EH+LF  FF +S
Sbjct:  163 QDQTKLNEIGEEIRRRLKYFSQAESIYQRLQNPTFSVSNDTFVEILNTIDECLEYMRVNPGFSEAFAYGVKYRNCLSKATQMMRNYVSNILTNATAQILGPQR----SETGMEQGSEAAFALYYGKFQASAPRVKRITGMIEGRLDRSVEYEQLLAALHQQFLANRATIMSSGVEQAIRDLSKKHKGDHCALVRSACAFMVHVCQDEHRLFFQFFTNS 376          
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_DROME (Conserved oligomeric Golgi complex subunit 3 OS=Drosophila melanogaster GN=Cog3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.166e-27
Identity = 69/213 (32.39%), Postives = 122/213 (57.28%), Query Frame = 2
Query:    5 EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSAS-SQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKK-EYVQILEECHKLYCEQRLSLVKGIVQQRIS--EFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFF 631
            E++RL E +  +Q +L YF ++E +     SP ++V +  F   L ++DEC+ Y+E NP++ +++ Y +K+RQ  ++A G++R++V SV+  A+ + +         S    +     +L Y +++ AA+++K V + IESRS    +Y Q++ +  + Y  QR S++   V   I   + + K    SLTRS CA+L+ VCQ E +LF  FF
Sbjct:  169 EQERLQELSHEIQRRLHYFSQVELLNQRLQSPTLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLVRNYVTSVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKVKRVAQLIESRSEHSLDYAQLMADLQQHYLAQRASVMSPAVNLSIQNVKVAHKGDHCSLTRSACAFLVHVCQDEQRLFYQFF 381          
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_DROPS (Conserved oligomeric Golgi complex subunit 3 OS=Drosophila pseudoobscura pseudoobscura GN=Cog3 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 66/213 (30.99%), Postives = 124/213 (58.22%), Query Frame = 2
Query:    5 EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEA-SLIYVRFKAAASELKPVLEEIESR-SSKKEYVQILEECHKLYCEQRLSLVKGIVQQRIS--EFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFF 631
            E+++L + +  +Q +L YF ++E +     SP ++V +  F   L ++DEC+ Y+E NP++ +++ Y +K+RQ  ++A G++R++V SV+  A+        S+  S +++     A +L Y +++ AA+++K V++ IE+R     +Y Q++ +  + Y  QR S++   V   I   + + K    SLTRS C +L+ VCQ E +LF  FF
Sbjct:  171 EQEKLQDLSNEIQRRLHYFSQVELLNQRLQSPTLSVASEAFRECLNKIDECLNYIEENPKFKDAATYNVKYRQCLAKASGLVRNYVTSVINQATEATLHPKNSATDSSSALQAPDAAFALYYGKYQTAAAKVKRVVQLIETRLEHSNDYTQLMTDLQQHYLAQRASVMSPAVNLSIQNVKTAHKGDHCSLTRSACGFLVHVCQDEQRLFYQFF 383          
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_DICDI (Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium discoideum GN=cog3 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 63/231 (27.27%), Postives = 123/231 (53.25%), Query Frame = 2
Query:    5 EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLK-------SASSQVQAAI---------RSSGGSK--TSVSEGVEASLIY----VRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFF 631
            E+ +L   A+++  KLK++++LE     F + N NV +  F   L+ L+  I +++ N  + ES+ YL ++  + SRALG+I+ ++ S LK       +A  Q++ ++          SSGGS      S   + + ++    +RF+A A +L+P+  E+E R+    Y+  L +   +Y   R S++  I+ +++   SK   + S+ RS   +++Q  + E+Q++ +FF
Sbjct:  183 EELKLRYIAQSIHDKLKFYNQLEIQTKKFNTTNFNVTDSTFLTSLENLENSINFMKSNSTFMESNKYLTQYGFIFSRALGLIKDYISSNLKILSRDIINAQKQLKTSVSTPTSPQLQSSSGGSPLINDFSNSTDFNDLFQHSNIRFRAFAPKLRPLCLELEKRAI-GPYLSYLYDTQNIYFNNRRSILSLIMFEKLQSLSKMTDISSMIRSSSLFMIQFYENEYQIYSNFF 412          
BLAST of CN189824 vs. ExPASy Swiss-Prot
Match: COG3_YEAST (Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces cerevisiae GN=COG3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.658e-15
Identity = 61/224 (27.23%), Postives = 105/224 (46.88%), Query Frame = 2
Query:    5 EKQ-RLIEFAEAVQSKLKYFDELENIAASFY---SPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQ-------ILEECHKLYCEQRLSLVKGIVQQRISEF---SKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFP 634
            EKQ +L    E++   L YF+ L+ I        SP + V   +F  +L  +DE + +++ N    +++ Y +KF+Q   RA  +I   + ++LK  + ++    ++   S T +      + +Y +F   A   K  + EI  RS++K Y +       IL EC   Y + RL L+  ++   I E     K + L    + G  Y  Q+C  E++LF  FFP
Sbjct:  137 EKQSKLSNLTESIPKALHYFEVLDPIMRRLNHATSPAI-VKKSSFTTMLATIDESLRFLDENSDLKDAAAYRIKFKQCLIRACELISHFLTNLLKQTNQEILDKTKNK-NSLTGLPSTTRDAFLYSKFYTIADTFKIQVSEIVKRSNEKAYNKYHDELNSILYECFNHYFQTRLRLLTPVIWSHIDEIVVKDKDQGLVKFIQDGKVYFQQLCADEYKLFVEFFP 358          
The following BLAST results are available for this feature:
BLAST of CN189824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
COG3_HUMAN4.156e-3535.68Conserved oligomeric Golgi complex subunit 3 OS=Ho... [more]
COG3_MOUSE3.518e-3435.21Conserved oligomeric Golgi complex subunit 3 OS=Mu... [more]
COG3_AEDAE3.082e-3033.94Conserved oligomeric Golgi complex subunit 3 OS=Ae... [more]
COG3_DROME4.166e-2732.39Conserved oligomeric Golgi complex subunit 3 OS=Dr... [more]
COG3_DROPS2.700e-2630.99Conserved oligomeric Golgi complex subunit 3 OS=Dr... [more]
COG3_DICDI8.413e-2027.27Conserved oligomeric Golgi complex subunit 3 OS=Di... [more]
COG3_YEAST3.658e-1527.23Conserved oligomeric Golgi complex subunit 3 OS=Sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002H17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189824 ID=CN189824; Name=CN189824; organism=Citrus sinensis; type=EST; length=642bp
GAGGGAAAAGCAAAGACTGATTGAGTTTGCAGAAGCAGTTCAGAGTAAGC
TTAAGTACTTTGACGAATTGGAGAATATTGCTGCCAGTTTTTATTCTCCA
AACATGAATGTTGGAAATGGGAACTTCTTCCACCTGCTCAAACGGCTTGA
TGAATGCATATTGTATGTTGAAGGCAACCCCCAATATGCAGAATCAAGTG
TTTACTTGCTCAAATTTCGACAGCTTCAGTCTCGAGCTTTGGGCATGATT
CGCAGTCATGTACTTTCTGTTCTCAAAAGTGCTTCTTCTCAGGTCCAAGC
AGCAATTCGGAGCAGTGGTGGTAGCAAAACATCTGTGTCCGAGGGTGTAG
AGGCATCACTAATTTATGTCCGTTTCAAGGCAGCTGCTAGTGAGCTTAAG
CCAGTGTTGGAAGAAATTGAAAGCAGATCATCAAAAAAAGAGTATGTTCA
GATCCTTGAAGAATGCCACAAATTGTACTGTGAACAGCGGCTTTCTTTGG
TGAAAGGCATAGTGCAACAGCGAATATCTGAATTTTCCAAAAAAGAAACT
TTGCCATCATTGACGAGATCAGGATGTGCATATCTAATGCAGGTCTGTCA
GCTTGAGCATCAATTATTTGATCACTTTTTTCCATCTTCTTC
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