CN189820

Overview
NameCN189820
Unique NameCN189820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189820 vs. ExPASy Swiss-Prot
Match: PCY2_DICDI (Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.894e-19
Identity = 42/68 (61.76%), Postives = 58/68 (85.29%), Query Frame = -2 
Query:  173 LRIARGLGDFLLVGIHNDQTVSAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNI 376
            L+ AR LGD+L+VG+H+D+ V  ++G++ PIMNLHER LSVL+CRYVDEV+IGAP+ V+KDMI + +I
Sbjct:  219 LKQARALGDYLIVGVHDDRVVHEQKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHI 286
[Close]
BLAST of CN189820 vs. ExPASy Swiss-Prot
Match: PCY2_RAT (Ethanolamine-phosphate cytidylyltransferase OS=Rattus norvegicus GN=Pcyt2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = -2 
Query:  173 FLLVGIHNDQTVSAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNI 349
            +++ G+H DQ V+  +G + PIMNLHER+LSVLACRYV EV+IGAP+ V+ +++  F +
Sbjct:  262 YVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLNHFKV 320
[Close]
BLAST of CN189820 vs. ExPASy Swiss-Prot
Match: PCY2_MOUSE (Ethanolamine-phosphate cytidylyltransferase OS=Mus musculus GN=Pcyt2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = -2 
Query:  173 FLLVGIHNDQTVSAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNI 349
            +++ G+H DQ V+  +G + PIMNLHER+LSVLACRYV EV+IGAP+ V+ +++  F +
Sbjct:  262 YVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLNHFKV 320
[Close]
BLAST of CN189820 vs. ExPASy Swiss-Prot
Match: PCY2_HUMAN (Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 31/59 (52.54%), Postives = 47/59 (79.66%), Query Frame = -2 
Query:  173 FLLVGIHNDQTVSAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNI 349
            +++ G+H DQ V+  +G + PIMNLHER+LSVLACRYV EV+IGAP+ V+ ++++ F +
Sbjct:  244 YIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKV 302
[Close]
BLAST of CN189820 vs. ExPASy Swiss-Prot
Match: PCY2_BOVIN (Ethanolamine-phosphate cytidylyltransferase OS=Bos taurus GN=PCYT2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = -2 
Query:  173 FLLVGIHNDQTVSAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNI 349
            +++ G+H DQ V+  +G + PIMNLHER+LSVLACRYV EV+IGAP+ V+ +++  F +
Sbjct:  244 YVIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFKV 302
The following BLAST results are available for this feature:
BLAST of CN189820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PCY2_DICDI5.894e-1961.76Ethanolamine-phosphate cytidylyltransferase OS=Dic... [more]
PCY2_RAT4.833e-1352.54Ethanolamine-phosphate cytidylyltransferase OS=Rat... [more]
PCY2_MOUSE4.833e-1352.54Ethanolamine-phosphate cytidylyltransferase OS=Mus... [more]
PCY2_HUMAN4.833e-1352.54Ethanolamine-phosphate cytidylyltransferase OS=Hom... [more]
PCY2_BOVIN8.243e-1352.54Ethanolamine-phosphate cytidylyltransferase OS=Bos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002H15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189820 ID=CN189820; Name=CN189820; organism=Citrus sinensis; type=EST; length=467bp
TTTTTTTTTTTTTTTTTGAAGCCTCAATTTTCAATGAGGTTCATATCACA
TATACTTCACTTATATACAAGCTAAGAATACATATGATAAACATTAGCTT
ACAAGATAACTACAAGGATAATTACAAGACTAACGATAACTACAAAGATA
ATTACAAGACTAACAATAATGAGATGTTGAATGTTGTAATCATGTCTTTA
GAAACTTCCCAAGGAGCACCAATTATAACCTCATCAACATAGCGACAAGC
TAAAACACTTAAACTTCTTTCGTGAAGATTCATGATAGGGCGATGAGCTC
CTCTTTTAGCACTGACTGTTTGATCATTGTGTATCCCAACAAGAAGAAAA
TCTCCAAGCCCCCGAGCAATCCTCAAAATATACAACGCAAGATAATTGGC
AATAAATACAAAAATAAGTGTAAAATAACAGAGATAAAGATAAATTTAAA
AAGAAAAAGACATGCCT
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