CN189809

Overview
NameCN189809
Unique NameCN189809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length242
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189809 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   19 VEESVKWTFTMQASFGKMDKEAQDWSVSSKISNCRCELQTPQCDAVGSXXXXXXXXPGKFIVSNCGDSRAVLCR 240
            +E+  +W  TM+ SF +MDKE   W  S   +NC+C+LQTP CD+VGS        P K +V+NCGDSRAVLCR
Sbjct:  144 MEDEEEWKTTMERSFTRMDKEVVSWGDSVVTANCKCDLQTPACDSVGSTAVVSVITPDKIVVANCGDSRAVLCR 217          
BLAST of CN189809 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   22 EESVKWTFTMQASFGKMDKEAQDWSVSSKISNCRCELQTPQCDAVGSXXXXXXXXPGKFIVSNCGDSRAVLCR 240
            ++  +W   M+ SF +MDKE   W  +   +NCRCELQTP CDAVGS        P K IV+NCGDSRAVLCR
Sbjct:  188 DKKEEWKKMMERSFTRMDKEVVRWGETVMSANCRCELQTPDCDAVGSTAVVSVITPEKIIVANCGDSRAVLCR 260          
BLAST of CN189809 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.247e-15
Identity = 44/82 (53.66%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   19 VEESVKWTFTMQASFGKMDKEAQ--------DWSVSSKISNCRCELQTPQCDAVGSXXXXXXXXPGKFIVSNCGDSRAVLCR 240
            V  S +WT TM  SF KMDKE          + +  S  ++CRCELQ+PQCDAVGS        P K IVSNCGDSRAVLCR
Sbjct:  167 VMASDEWTETMVKSFQKMDKEVSQRECNLVVNGATRSMKNSCRCELQSPQCDAVGSTAVVSVVTPEKIIVSNCGDSRAVLCR 248          
BLAST of CN189809 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.037e-12
Identity = 36/73 (49.32%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   22 EESVKWTFTMQASFGKMDKEAQDWSVSSKISNCRCELQTPQCDAVGSXXXXXXXXPGKFIVSNCGDSRAVLCR 240
            E    W  +M  SF +MD E    +     + CRCELQ P CDAVGS        P K IV+NCGDSRAVLCR
Sbjct:  177 EADADWEKSMARSFTRMDMEVVALNADGA-AKCRCELQRPDCDAVGSTAVVSVLTPEKIIVANCGDSRAVLCR 248          
BLAST of CN189809 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.966e-12
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   19 VEESVKWTFTMQASFGKMDKEAQDWSVSS--KISNCRCELQTPQCDAVGSXXXXXXXXPGKFIVSNCGDSRAVLCR 240
            ++E  +W   M+ SF +MD EA   S  S      CRCE+Q P+CD VGS        P   +V+NCGDSRAVLCR
Sbjct:  143 LDEEARWRGVMERSFARMDAEAVASSRGSVAPAPTCRCEMQLPKCDHVGSTAVVAVLGPRHVVVANCGDSRAVLCR 218          
The following BLAST results are available for this feature:
BLAST of CN189809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
P2C24_ARATH3.135e-1751.35Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
P2C03_ARATH1.556e-1653.42Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C37_ARATH2.247e-1553.66Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C78_ARATH3.037e-1249.32Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
P2C30_ORYSJ3.966e-1246.05Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002H06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189809 ID=CN189809; Name=CN189809; organism=Citrus sinensis; type=EST; length=242bp
CTTTAATCTTGTAACGTTGTTGAAGAATCGGTGAAGTGGACTTTTACAAT
GCAGGCGAGCTTTGGGAAGATGGATAAGGAGGCGCAAGATTGGAGTGTGA
GTTCCAAGATCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGAC
GCCGTTGGATCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGTTTAT
CGTCTCTAACTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAA
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