CN189808

Overview
NameCN189808
Unique NameCN189808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.615e-39
Identity = 88/140 (62.86%), Postives = 94/140 (67.14%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR---------------AQKXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLALA 768
            DEL RIEAAGGRVIYWDG RVLGVLAMSRAIGD YLKPYV SEPEVTVTERT +DECLILASDGLWDVV+NE AC VVR CF                +                     +SSDKAC DA++LLTKLALA
Sbjct:  257 DELERIEAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVRACFHNNGPPAPAARPSGVPSSAEAAETENGGAASVKGISKAESSDKACSDAAMLLTKLALA 396          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.600e-38
Identity = 82/125 (65.60%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLALA 768
            DEL+RI+ AGGRVIYWDG RVLGVLAMSRAIGDNYLKPYVI +PEVTVT+RT EDECLILASDGLWDVV NETAC V R C R                       ++  AC DA++LLTKLALA
Sbjct:  265 DELIRIQQAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVARMCLRG--------------AGAGDDSDAAHNACSDAALLLTKLALA 375          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.629e-37
Identity = 86/131 (65.65%), Postives = 93/131 (70.99%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQ------KXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLALA 768
            DEL RI+AAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVIS PEVTVT+R   D+ LILASDGLWDVVSNETACSVVR C R +                         G   DKAC +AS+LLT+LALA
Sbjct:  265 DELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLALA 395          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.779e-37
Identity = 86/141 (60.99%), Postives = 93/141 (65.96%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXGQS----------------SDKACLDASILLTKLALA 768
            DEL RI+AAGGRVIYWDG RVLGVLAMSRAIGD YLKPYV SEPEVTVTER  +DECLILASDGLWDVV+NE AC VVR CFR+                    G S                SDKAC DA++LL KLA+A
Sbjct:  257 DELERIKAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERADDDECLILASDGLWDVVTNEMACEVVRACFRSNGPPSPPGCSRPKAVLPPPAGASGGGGGDAVVKGVDKAESDKACADAALLLAKLAIA 397          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.740e-37
Identity = 84/125 (67.20%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLALA 768
            DEL RIE AGGRVIYWD PRVLGVLAMSRAIGDNYLKPYV  EPEVT+T+R  +D+CLILASDGLWDVVSNETACSV R C R                        SDKAC +AS+LLTKLALA
Sbjct:  234 DELDRIEGAGGRVIYWDCPRVLGVLAMSRAIGDNYLKPYVSCEPEVTITDR-RDDDCLILASDGLWDVVSNETACSVARMCLRG-----------GGRRQDNEDPAISDKACTEASVLLTKLALA 346          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.241e-36
Identity = 83/143 (58.04%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCF------------------RAQKXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLALA 768
            DEL RI+ AGGRVIYWDG RVLGVLAMSRAIGDNYLKPYV SEPEVTVT+RT EDE LILA+DGLWDVV+NE AC++VR C                   R+++                  G+ +DKAC +AS+LLTKLALA
Sbjct:  277 DELDRIQEAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVTSEPEVTVTDRTEEDEFLILATDGLWDVVTNEAACTMVRMCLNRKSGRGRRRGETQTPGRRSEEEGKEEEEKVVGSRKNGKRGEITDKACTEASVLLTKLALA 419          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.279e-31
Identity = 73/125 (58.40%), Postives = 85/125 (68.00%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLALA 768
            DEL RIEAAGGRVI+W+G RVLGVLAMSR+IGD YLKPYV + PEVTVT R+  DECLILASDGLWDVVSNE AC V ++C R                      +   + C +A+ +LTKLALA
Sbjct:  236 DELERIEAAGGRVIFWEGARVLGVLAMSRSIGDAYLKPYVTAVPEVTVTGRSDFDECLILASDGLWDVVSNEAACEVAQSCLR----------------------RGRQRWCAEAAAVLTKLALA 338          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.076e-31
Identity = 79/151 (52.32%), Postives = 88/151 (58.28%), Query Frame = -3
Query:  394 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTER-TAEDECLILASDGLWDVVSNETACSVVRTCFRAQKXXXXXXXXXXXXXXXXXXGQS-------------------------SDKACLDASILLTKLALA 768
            DEL RI AAGGRVI+WDG RV G+LAMSRAIGD+YLKPYVI +PEV V ER   EDE LILASDGLWDVVSNE AC+VVR C R+                      S                          DKAC +A++LLTKLALA
Sbjct:  235 DELERIHAAGGRVIFWDGARVFGMLAMSRAIGDSYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVRACLRSSGRRERNRSSPTSNLSPRQSSSSGDEAPNDGAPSAAAGSESDEESAAEEDKACAEAAVLLTKLALA 385          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C37_ORYSJ (Probable protein phosphatase 2C 37 OS=Oryza sativa subsp. japonica GN=Os04g0167900 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.080e-28
Identity = 67/131 (51.15%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  397 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR-------AQKXXXXXXXXXXXXXXXXXXGQSSDKACLDASILLTKLAL 768
            DE  RIEA GGRV+Y +GPRV G+LAMSRA+GD YLKP VI EP++T+T RT +DECLILASDG+WDV+SNETA  V R C          +                   GQ S+  C  A+ LL +LAL
Sbjct:  325 DEKARIEAVGGRVVYLNGPRVRGILAMSRALGDKYLKPEVICEPDITITVRTVDDECLILASDGMWDVISNETASDVARQCLEDGSPTSGRRAARSGEAASSSAGAPAAAVGQESEPRCYRAAALLARLAL 455          
BLAST of CN189808 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.022e-28
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = -3
Query:  526 DELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTC 768
            DE+ R+EAAGGRVI W+G R+LGVLA SR+IGD YLKPYVI+EPEVTV +RT +DE LILASDGLWDVVSN+ AC + R C
Sbjct:  263 DEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNC 343          
The following BLAST results are available for this feature:
BLAST of CN189808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
P2C09_ORYSJ6.615e-3962.86Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]
P2C37_ARATH5.600e-3865.60Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C78_ARATH1.629e-3765.65Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
P2C49_ORYSJ2.779e-3760.99Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C24_ARATH4.740e-3767.20Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
P2C03_ARATH5.241e-3658.04Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C68_ORYSJ2.279e-3158.40Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]
P2C30_ORYSJ5.076e-3152.32Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C37_ORYSJ3.080e-2851.15Probable protein phosphatase 2C 37 OS=Oryza sativa... [more]
P2C08_ORYSJ4.022e-2872.84Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002H06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189808 ID=CN189808; Name=CN189808; organism=Citrus sinensis; type=EST; length=770bp
CTTTTTTTGGGCTAAATTGACAAACTAAGATTCATCCCACTTTGGATTTA
AAGTAATTTGTACAAGAGTATTCACCAATCTAAGTACTACTAGTCCCCAT
TTCTGCAGATCTTCTTGCAGCTTTGTGAACATTTCTCCACAACCACAACC
AGCGAAAAACAGGAAACCCCCCAAAAATTAGAAGCCTTGCGCATCATCAA
ATCAATCACTATTTTTCAACCCCTGCAAGTTACAATTATATTAAAGATTT
AACTTTCTCGAGGAAAATCAGTCACTTAATTTTGCGTATTATATATATAT
AACTCATTTTAATTAACTACTTAATCCCTGCTTTTGACTTTGATTCCTCC
TTAAATCGACCACCACAACGCTGACATTATCCGAACTCCGCCTAGCCAAG
GCCAGCTTGGTCAACAAAATTGATGCGTCCAAGCAAGCTTTGTCAGAGCT
TTGACCAGACACTGCCACCTCGCTCCCCGGCGATCCGGGTGGTGAAGCTG
CAGCCGCCGCCTTCTGAGCTCGGAAACACGTGCGCACCACGCTGCACGCC
GTCTCGTTCGACACCACGTCCCATAACCCATCGCTCGCCAGAATCAAACA
CTCATCCTCCGCCGTACGCTCAGTCACGGTCACCTCCGGCTCCGATATCA
CATACGGCTTTAAGTAATTGTCTCCGATCGCTCTCGACATCGCGAGAACG
CCAAGCACTCTCGGACCGTCCCAGTAAATCACACGGCCGCCGGCGGCTTC
GATTCTAAGCAACTCATCCG
back to top