CN189798

Overview
NameCN189798
Unique NameCN189798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189798 vs. ExPASy Swiss-Prot
Match: LTI65_ARATH (Low-temperature-induced 65 kDa protein OS=Arabidopsis thaliana GN=LTI65 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 74/207 (35.75%), Postives = 107/207 (51.69%), Query Frame = -3 
Query:  188 EKLSPVYEKVAGAGSTLMSKIPGTTNTGSEKEHGVGAQDKGVSVKDYFAEKLRPGEEDRALSQVITEALRKKKAKQENKSTSSRPVTEVVSDALHNRNEEPEEITSRPMGKVTESEEVARRLGTTEHDTSNEGIDSSFVNNSNMGVVGKIKGAVGSWFGGKG------EETPGSQQSHSAPVGSALDEAGRXXXXXTGERRLQETGN 790
            EKL+PVYEKV   GST+M+K+P +      KE   G ++KGV+ K+Y +EKL+PGEED+ALS++I E L       E K+T+++ V   V           E+I          S+++A   G  E   + EG           G+VGK+KGAV SW GGK       EE+P S  +    +G + D  G       G + +Q++GN
Sbjct:  444 EKLTPVYEKVKETGSTVMTKLPLSGGGSGVKETQQG-EEKGVTAKNYISEKLKPGEEDKALSEMIAEKLH-FGGGGEKKTTATKEVEVTV-----------EKI---------PSDQIAEGKGHGE-AVAEEG-------KGGEGMVGKVKGAVTSWLGGKPKSPRSVEESPQSLGTTVGTMGFS-DSGGSELGGSGGGKGVQDSGN 619
The following BLAST results are available for this feature:
BLAST of CN189798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LTI65_ARATH6.083e-1935.75Low-temperature-induced 65 kDa protein OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189798 ID=CN189798; Name=CN189798; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTGAACTAAACCACAGGCACTATATTATTACGAACAGAATTACAG
AAAGGCCAATTCACATTTAAGAGTACACAAAATACTAACAATAATCTCCA
ACAAATCCAAGCATACAACACTTCAAAAAAAAGAAAAAAACTTTTATCGC
AATAAAATCAAGGCCCCTGTAAGATGGACAGTCATCAGTTTCCAGTCTCC
TGAAGCCTGCGCTCCCCAGTAGTGTTGTTATTGTTGCGTCCTGCTTCATC
AAGAGCAGAACCAACGGGGGCACTATGTGATTGCTGAGACCCCGGAGTCT
CCTCTCCTTTTCCACCAAACCACGAACCTACAGCACCTTTGATCTTACCC
ACCACACCCATATTGGAATTATTCACAAAGCTCGAATCAATTCCCTCATT
AGAAGTATCATGCTCTGTGGTGCCCAATCTCCTTGCGACCTCCTCAGATT
CAGTCACCTTTCCCATTGGCCTACTTGTTATCTCCTCAGGTTCTTCATTC
CGATTATGCAAAGCATCTGAGACTACTTCAGTCACTGGCCTGGACGACGT
AGACTTGTTCTCCTGCTTTGCCTTCTTCTTTCGCAGAGCCTCAGTTATGA
CCTGTGAGAGCGCCCGGTCTTCTTCTCCAGGCCTCAATTTCTCTGCAAAA
TAGTCCTTCACAGAAACTCCTTTGTCTTGCGCCCCAACCCCGTGTTCCTT
CTCGCTGCCTGTATTAGTAGTGCCAGGTATTTTCGACATGAGAGTACTTC
CAGCCCCAGCAACCTTCTCATAAACTGGACTCAGTTTCTCTGTCA
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