CN189794

Overview
NameCN189794
Unique NameCN189794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = -1
Query:  513 EYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 647
            EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   53 EYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = -1
Query:  513 EYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 647
            EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   53 EYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = -1
Query:  513 EYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 647
            EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:   54 EYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = -1
Query:  513 EYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 647
            EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:   53 EYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  516 YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 644
            YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +
Sbjct:   55 YVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-12
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = -1
Query:  513 YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 644
            YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++  +P
Sbjct:   57 YVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  522 YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 644
            YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   57 YVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  522 YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 644
            YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   57 YVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  522 YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 644
            YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   57 YVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of CN189794 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = -1
Query:  522 YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 644
            YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   57 YVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
The following BLAST results are available for this feature:
BLAST of CN189794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RS103_ARATH2.496e-1991.1140S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH2.496e-1991.1140S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH2.113e-1888.8940S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_ORYSJ2.337e-1786.6740S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS10_SPOFR7.778e-1369.7740S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_ICTPU1.733e-1263.6440S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_RAT2.263e-1270.7340S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE2.263e-1270.7340S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN2.263e-1270.7340S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]
RS10_BOVIN2.263e-1270.7340S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189794 ID=CN189794; Name=CN189794; organism=Citrus sinensis; type=EST; length=647bp
GCACCATATTAATGACACCTTATACCGAAATATCAAAATACAACTTGCGC
GTAACCAATAATGCAAATACGTGATGGAGGGTTCCACTTTAAACCAACAA
GCCATGGCTGAGGAAAAACTGTAAGATCTCATAATGAANCTTAATATTGT
ACTTTAAAGCTTACAGAAATACTATAGAAAATTCAACAAAGGCATTAAAC
TTGTTCTAAAGACTTGAAACACTAATTTGGGGCAAACATGAACTAAGCAA
ACCGGCCTTAACTTCAAGGAAATCCTGAACCTGATGGAGCTGCACCATAG
CCTCCACCTCCGCGACCAAAACCAGGTCTTCCACCAAAACCCCTGAAGGA
TGGCTGGAAATCAGCAGGGGCTCCACCTTTCTCACCACCAAAGTCACCAC
CACGAGGACCACCACGGTACCCTTCACGGTCACCAAACCTCGGTCGGTCT
CCATCAAAACGAGGTGGGCCCCTTGGACGATCACCACCAGGTCCACCCAT
CGGGCGACCAGCTGGCTTAGCGGATTTCTTCAAGGTAGCAGGAACAATTT
CTGATGGAAGATTGAGGTAAGTCCTCAAAAACTCAATCCCATCATTCGTA
AGGTACCAATAATAGTGCATCCACGCAAATGTCTCACGAACATACTC
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