CN189793
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2) HSP 1 Score: 379.793 bits (974), Expect = 8.869e-105 Identity = 186/216 (86.11%), Postives = 201/216 (93.06%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 760 DWYDIKAPS F RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGMD TTDKLRSLV+KW +LIEA+VDVKTTDN+TLRMFCIGFTK+ NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ Sbjct: 28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKL 243
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1) HSP 1 Score: 377.867 bits (969), Expect = 3.370e-104 Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 760 DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKHRVFE+SL DL +E++A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCIGFTKR NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG K+ Sbjct: 28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKV 243
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4) HSP 1 Score: 372.089 bits (954), Expect = 1.849e-102 Identity = 183/217 (84.33%), Postives = 200/217 (92.17%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKM 760 DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+HRVFE+SL DL +E+H++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKW +LIEA+VDVKTTD+YTLRMFCIGFTK+ NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+ Sbjct: 28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKL 244
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2) HSP 1 Score: 370.548 bits (950), Expect = 5.380e-102 Identity = 183/217 (84.33%), Postives = 198/217 (91.24%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 760 DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TLIEA+VDVKTTD Y LR+FCIGFTKR PNQVKRTCYAQASQIRQIRRKM EIM QA+SCDLK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K+ Sbjct: 28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKL 244
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 9.178e-102 Identity = 183/216 (84.72%), Postives = 196/216 (90.74%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 760 DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL +E+ AYRKIRLRAEDVQG+NVLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLR+FCI FTK+ NQ K+TCYAQ+SQIRQIRRKMREIM A SCDLK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K+ Sbjct: 28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKL 243
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 2.045e-101 Identity = 182/216 (84.26%), Postives = 198/216 (91.67%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 760 DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKHRVFEVSL DL +E+ ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM QA+SCDLK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ Sbjct: 28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKL 243
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3) HSP 1 Score: 364.77 bits (935), Expect = 2.952e-100 Identity = 182/217 (83.87%), Postives = 196/217 (90.32%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKM 760 DWYD+KAP F RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD YTLRMFCI FTKR NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVK+ Sbjct: 28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKV 244
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1) HSP 1 Score: 363.614 bits (932), Expect = 6.577e-100 Identity = 182/216 (84.26%), Postives = 197/216 (91.20%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 760 DWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEGLKHRVFEV L DL +E+ AYRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTD+YTLRMFCIGFTK+ NQ KRTCYAQ+SQIRQIRRKM EIM QA+SCDLK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ Sbjct: 28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKL 243
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3) HSP 1 Score: 362.459 bits (929), Expect = 1.465e-99 Identity = 180/217 (82.95%), Postives = 197/217 (90.78%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 760 DWYD+KAPS F RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL +E++AYRKIRLRAEDVQG+NVL FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLR+FCI FTKR NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVK+ Sbjct: 28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKV 244
BLAST of CN189793 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1) HSP 1 Score: 356.295 bits (913), Expect = 1.050e-97 Identity = 178/203 (87.68%), Postives = 187/203 (92.12%), Query Frame = 2 Query: 113 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLME 721 DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCI FTK+ NQ K+T YAQ+SQIRQIRRKMREIM QAASCDLK LV KFI E+IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLME Sbjct: 28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230 The following BLAST results are available for this feature:
BLAST of CN189793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 201
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189793 ID=CN189793; Name=CN189793; organism=Citrus sinensis; type=EST; length=760bpback to top |