CN189790

Overview
NameCN189790
Unique NameCN189790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189790 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:    3 LDCIPSSGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVL 206
            +  + SS N+LNLQ+LS+ GCS ++DKS   ++KLG+TLLGLN+Q C  IS+++VD L+E LWRCD+L
Sbjct:  555 IKALASSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTLLENLWRCDIL 622
[Close]
BLAST of CN189790 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.911e-16
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   18 SSGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVLS 209
            +S + L LQILS++GCSMV+DKSL A+  LG TLLGLNLQ C +IS ++VD LVE+L++CD+LS
Sbjct:  565 ASSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFLVERLYKCDILS 628
The following BLAST results are available for this feature:
BLAST of CN189790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EBF2_ARATH2.121e-1755.88EIN3-binding F-box protein 2 OS=Arabidopsis thalia... [more]
EBF1_ARATH8.911e-1662.50EIN3-binding F-box protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189790 ID=CN189790; Name=CN189790; organism=Citrus sinensis; type=EST; length=545bp
ATTTGGATTGCATCCCTAGCTCTGGAAACTATCTCAATCTGCAGATTCTT
TCGCTGTCAGGTTGCTCAATGGTTTCAGACAAGAGCTTGGGTGCCCTAAG
AAAGTTGGGTCAGACCCTTCTGGGTTTGAACCTCCAGCACTGCAATGCAA
TCAGCACCAACTCTGTTGACATGCTTGTGGAGCAGTTATGGAGGTGTGAT
GTCCTCTCATAAGCTGCAAAGCATTCGACAAAACCCCATTCGATAATATG
TAGCACTGATACAAAGGATGGGGATGAACATATCAGGAAGTCTCAGAATT
TTCTAGTCAGCATCTGTGAGTAGCAGCAGCAGTTTGTTTAGTTTTTGGGT
CCATCTGCTATGGGTCTTCAGTCTTCAAGTGCTCGGTTTCTTTTTCCAGG
GTGAATATGGCCTCTACCTTTTTTGCAGGTTTCCGAATGAAAGAAAATCT
GTTACAGCTTTTTGATGCCCAATTACGGGTGTCACTTTAAGGCCATATTT
TCCTGAGAATACAGCTACTGGGTTATGTTTCTAGGGTAAAAAAAA
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