CN189775

Overview
NameCN189775
Unique NameCN189775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.670e-77
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.767e-77
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNV IEELPANVADLL
Sbjct:  270 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 7.767e-77
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNVVIEELPANVADLL
Sbjct:  270 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.014e-76
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV+EELP+NVADLL
Sbjct:  268 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.260e-76
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN VT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.260e-76
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERML DIQKFYNVVIEELPANVADLL
Sbjct:  269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.855e-76
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR+RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DDERMLFDIQKFYNV+IEELP+NVADLL
Sbjct:  269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.035e-76
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  270 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.035e-76
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = -1 
Query:  326 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADL
Sbjct:  110 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253
[Close]
BLAST of CN189775 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.575e-76
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = -1 
Query:  323 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 757
            TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG SGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  269 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
The following BLAST results are available for this feature:
BLAST of CN189775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF414_TOBAC2.670e-7799.31Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A3_ORYSJ7.767e-7798.62Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A1_ORYSJ7.767e-7798.62Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A1_ARATH1.014e-7697.93Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A2_NICPL2.260e-7698.62Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF410_TOBAC2.260e-7698.62Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF4A8_TOBAC3.855e-7697.24Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A_WHEAT5.035e-7697.93Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A6_TOBAC5.035e-7697.92Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF411_TOBAC6.575e-7697.24Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002G11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189775 ID=CN189775; Name=CN189775; organism=Citrus sinensis; type=EST; length=757bp
GACGGTAATATGCAGCCTTGTTTATATTAGATGAAAGAACAAGCCAAATA
ACTTTAAAAAGCAATAAGCAAGCAAGTCGAGTTTTCCTAACACAAATAAA
CTAGCCATGCTCCAACTCTACATAATGTCCCGTCGCACGACAATTAAAAA
AAAGTGTAGAACAACATAATTTAATGCAAACCTACAACAGATGCAACATA
AACTTAAACAAAGGCCATTCCAAATGCCATAATTGTAGGGTTCTTTTAGC
AACCACTCCAGACCCACCATAATGACTAGACTTCAAACTTCAAAAACACC
TTACCAATCCAAAAACACATCACAGGAGATCAGCAACATTTGCTGGCAGC
TCTTCAATTACGACATTGTAAAACTTTTGAATATCAAACAGCATCCTTTC
ATCATCCCTGGTCACGAAATTAATGGCAACACCCTTTCTTCCAAATCGTC
CACTACGACCTATACGATGCAGGTAGTTTTCTGGCTGTGTAGGAAGATCA
TAATTTATGACCAGGGACACTTGCTGGACATCAATACCACGTGCCAAGAG
ATCAGTAGTGATAAGCACACGAGAGGAACCAGACCGGAATTCACGCATGA
TGATGTCCCTAGTGTTTTGGTCCATGTCACCGTGGGTGGCAGACACGGTA
TGATCACGACTACGCATCTTATCTGTCAGCCAATCTACCTTACGCCGGGT
GTTCACAAAGATGACACTTTGGGTGATTGCCAAAGTCTCGTACAGATCGC
ATAGTGT
back to top