CN189772

Overview
NameCN189772
Unique NameCN189772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189772 vs. ExPASy Swiss-Prot
Match: PALA_CRYNE (pH-response regulator protein palA/RIM20 OS=Cryptococcus neoformans GN=RIM20 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 60/220 (27.27%), Postives = 94/220 (42.73%), Query Frame = 3
Query:   66 IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSVGS-------------YEDLFRKEISKYDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQP 686
            +E  +P    P  SL  +    V  L+ SL +L+   A RA L    +++   DDI P+++                  +EDLF K + KY  +             LL QI+ QNE F +    +     RE+  + +  A  K+REI +N  EG+KFY +  + +   K  C  F+ TR I   +M    Q+QM  ++   ++    Y    P   QP
Sbjct:  555 MEDYVPGTTSPSGSLPPS----VRPLRASLEELDDRIAHRARLVREARQISAADDIRPEVLKEAAKLAHGGSGDVKTEWFEDLFEKGLEKYMGVKREMDEEVAKHDELLEQIRTQNESFLSERKDDPIIKERERRLQDMDLAYWKWREIVDNAEEGIKFYNSFAEMLHGFKAACGQFLNTRRIDVGQMTTQFQQQM-NVSEPQQQPEPRYQSPSPQSFQP 769          
BLAST of CN189772 vs. ExPASy Swiss-Prot
Match: ALIX_DICDI (ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 60/230 (26.09%), Postives = 109/230 (47.39%), Query Frame = 3
Query:    9 IERSVRDH-SALMSILDRRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSVGSYEDLFRKEISKYDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRAS-REKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLNFQDRKTSGSYDGSYPTVGQPHQ 692
            I +   DH +++  + ++  I + LPT      +L + + A + +L   +  L+ L A R  + + LK + +KDDI  KL++       ++ +EI KY+ +             L+  I+ +NE+F+   N +  + + RE+  ++   A   Y E+K N++EG +FY+  Q+ +     +C DF   R     E IE  ++  AG+N     TS S     P    P+Q
Sbjct:  501 IRKKFEDHKNSIQELENQTEIIALLPT-----NNLPSGKIAEIASLTVLMNDLDALMANRESIAEKLKNLCKKDDITLKLLSPQKDKSLIYAEEIQKYEPLQMSLNESFLKQQKLIEDIRKENEKFT---NQKSKQGNQREEILQKYANAYKVYNELKANLDEGTQFYLNFQEILNKFLNRCKDFTTGRE---NEKIELKRQIEAGVNPHSPLTSPSPSLQSPVNNYPNQ 719          
BLAST of CN189772 vs. ExPASy Swiss-Prot
Match: PDC6I_RAT (Programmed cell death 6-interacting protein OS=Rattus norvegicus GN=Pdcd6ip PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 51/190 (26.84%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   66 IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSVG-----SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMA 617
            + +A+P+ A P  ++  +E  +V  LK  L  L+ +  +R GLE+ LK +    D+  K +T++      + E L   E+ + Y  +             LL  IQ  ++EFS +       + RE+  K +  A   + E+  N+ EG KFY  L + +   + +CSD V  R  +  E+++D+Q+ +A
Sbjct:  535 LNAAIPS-ANPAKTMQGSE--VVNVLKSLLSNLDEIKKEREGLENDLKSVNF--DMTSKFLTALAQDGVINEEALSVTELDRIYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNSEASLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIA 719          
BLAST of CN189772 vs. ExPASy Swiss-Prot
Match: PDC6I_HUMAN (Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 51/190 (26.84%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   66 IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSVG-----SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMA 617
            + +A+P+ A P  ++  +E  +V  LK  L  L+ +  +R GLE+ LK +    D+  K +T++      + E L   E+ + Y  +             LL  IQ  ++EFS +    +    RE+  K +  A   + E+  N+ EG KFY  L + +   + +CSD V  R  +  E+++D+Q+ +A
Sbjct:  530 LNAAIPS-ANPAKTMQGSE--VVNVLKSLLSNLDEVKKEREGLENDLKSVNF--DMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIA 714          
BLAST of CN189772 vs. ExPASy Swiss-Prot
Match: PDC6I_MOUSE (Programmed cell death 6-interacting protein OS=Mus musculus GN=Pdcd6ip PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 50/190 (26.32%), Postives = 91/190 (47.89%), Query Frame = 3
Query:   66 IESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSVG-----SYEDLFRKEISK-YDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMA 617
            + +A+P+ A P  ++  +E  +V  LK  L  L+ +  +R  LE+ LK +    D+  K +T++      + E L   E+ + Y  +             LL  IQ  ++EFS +    +    RE+  K +  A   + E+  N+ EG KFY  L + +   + +CSD V  R  +  E+++D+Q+ +A
Sbjct:  530 VNAAIPS-ANPAKTMQGSE--VVSVLKSLLSNLDEIKKERESLENDLKSVNF--DMTSKFLTALAQDGVINEEALSVTELDRIYGGLTSKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIA 714          
BLAST of CN189772 vs. ExPASy Swiss-Prot
Match: PALA_ASPOR (pH-response regulator protein palA/RIM20 OS=Aspergillus oryzae GN=palA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 53/224 (23.66%), Postives = 91/224 (40.62%), Query Frame = 3
Query:    9 IERSVRDHSALMSILD--RRPIESALPTLARPIMSLDATEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDI--------------LPKLMTSVGSYEDLFRKEISKYDHICXXXXXXXXXXXXLLMQIQAQNEEFSAIFNLEDYRASREKCYKQIQAAIAKYREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQ--RQMAGLN 626
            +E+ +RD  A+  +L    R +E  +P+  R  +  +   ++I   L+  L ++  L  +R      LK+  R DDI               P        +EDLF +++  YD               +  Q++  N  F+     +     REK  ++++    KY+EI  NI  G KFY  L   +   +  C  FV  R ++  ++  D+     MA LN
Sbjct:  516 VEQKLRDSEAVFRVLTGTNRDLEMYVPSSRRAAIPPEVERESI--RLRGCLSEVSRLENRRKRRAQALKDKARTDDISKLQGWEAARLEREFPMQAIQASQFEDLFEEQLHLYDTDLEMVTQEQHEQDQISAQVREANRAFTRAHTGDASTKEREKALQELENGYLKYKEIISNIEVGRKFYNDLAKIVGRFRDDCKAFVHQRRMEASQIEGDITSVAAMASLN 737          
The following BLAST results are available for this feature:
BLAST of CN189772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PALA_CRYNE1.039e-1327.27pH-response regulator protein palA/RIM20 OS=Crypto... [more]
ALIX_DICDI1.039e-1326.09ALG-2 interacting protein X OS=Dictyostelium disco... [more]
PDC6I_RAT4.367e-1226.84Programmed cell death 6-interacting protein OS=Rat... [more]
PDC6I_HUMAN9.728e-1226.84Programmed cell death 6-interacting protein OS=Hom... [more]
PDC6I_MOUSE2.830e-1126.32Programmed cell death 6-interacting protein OS=Mus... [more]
PALA_ASPOR6.305e-1123.66pH-response regulator protein palA/RIM20 OS=Asperg... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G10_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189772 ID=CN189772; Name=CN189772; organism=Citrus sinensis; type=EST; length=693bp
ATGCCCGAATTGAGCGTTCAGTGAGAGATCATTCTGCACTCATGTCAATC
CTTGATCGCCGTCCCATAGAATCGGCCCTTCCTACTTTGGCTAGGCCAAT
AATGTCTTTGGATGCCACTGAGGATGCTATTGTTGGGGCTCTGAAGCAAA
GCTTGAGGCAATTGGAGACTCTTGGTGCTCAAAGGGCAGGTCTTGAAGAC
ATGCTCAAAGAGATGAAAAGAAAGGATGACATTCTACCAAAGTTGATGAC
CTCTGTTGGATCATATGAGGATCTCTTCAGGAAGGAGATATCAAAATATG
ATCACATTTGTGAAGAAATTGCCCAAAATATCGAGGCACAGGAACAATTG
CTGATGCAAATTCAGGCTCAAAATGAAGAGTTCTCTGCCATCTTTAATCT
TGAAGACTACAGAGCATCTCGAGAGAAGTGTTATAAGCAAATTCAAGCTG
CCATAGCTAAGTATCGAGAAATTAAAGAAAACATTAATGAGGGGTTGAAG
TTTTATGTTACTCTTCAGGATGCAATCACAAATATCAAGCAGCAATGCAG
TGACTTTGTGATGACCAGAAACATCCAGTGCCGAGAAATGATTGAAGATG
TACAGAGACAGATGGCAGGTCTTAATTTTCAGGATCGTAAAACCTCGGGT
TCGTATGATGGCAGCTATCCTACAGTTGGACAACCTCACCAAA
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