DR908872

Overview
NameDR908872
Unique NameDR908872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 79/146 (54.11%), Postives = 102/146 (69.86%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAMLDWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQ---------------KAEATRSRANEFSSSERYSDLTDDSSLLVQAMELSGPR 395
            LELI+G+RALEFGK+ +QKGAML+WV+K+H+E K+E LVD++L   YDRIE+ EM+QVALLCTQ+LP+ RPKMSEVV+MLEGDGLAE+WAAS                 +    ++      S  + D  D+ +L   AMELSGPR
Sbjct:  489 LELITGMRALEFGKSVSQKGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGLAERWAASHDHSHFYHANMSYRTITSTDGNNQTKHLFGSSGFEDEDDNQALDSFAMELSGPR 634          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.683e-31
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAML-DWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSDLTDDSSLLVQAMELSGPR 395
            LELI+G RA +  + AN    ML DWVK + +EKKLEMLVD DL++NY   E+E+++QVALLCTQ  P  RPKMSEVVRMLEGDGLAEKW   QK E  R       SS   SD   DS+  + AMELSGPR
Sbjct:  499 LELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEVLRQEVE--LSSHPTSDWILDSTDNLHAMELSGPR 628          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.355e-31
Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAML-DWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSDLTDDSSLLVQAMELSGPR 395
            LELI+G RA +  + AN    ML DWVK + +EKKLEMLVD DL+ NY+  ELE+++QVALLCTQ  P  RPKMSEVVRMLEGDGLAEKW   QK E  R   +   S    SD   DS+  + A+ELSGPR
Sbjct:  496 LELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEILREEID--LSPNPNSDWILDSTYNLHAVELSGPR 625          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.633e-26
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAML-DWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSD-LTDDSSLLVQAMELSGPR 395
            LELI+G RA +  + AN    ML DWVK + +EKKLE LVD DL+ NY   E+E+++QVALLCTQ  P  RPKMSEVVRMLEGDGLAE+W   QK E  R   N  +     S  +  DS+  ++    SGPR
Sbjct:  483 LELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDFNYPTHHPAVSGWIIGDSTSQIENEYPSGPR 615          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.851e-25
Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAML-DWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSDLTDDSSLLVQAMELSGPR 395
            LEL++G RA++F +   +   +L D VKK+ +EK+L  +VDK+L   Y + E+E M+QVALLCTQ  P  RP MSEVVRMLEG+GLAE+W   Q  E T  R +EF   +R  D  +DS     A+ELSG R
Sbjct:  484 LELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQNVEVT--RRHEFERLQRRFDWGEDSMHNQDAIELSGGR 613          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.878e-23
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAML-DWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSD-LTDDSSLLVQAMELSGPR 395
            LELI+G +A +  + AN    ML DWVK++ +EKKLE LVD +L+  Y   E+E+++Q+ALLCTQ     RPKMSEVVRMLEGDGLAE+W   QK E      N  +     +D L   S+ L++    SGPR
Sbjct:  469 LELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEMPIHDFNYQAYPHAGTDWLIPYSNSLIENDYPSGPR 601          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.878e-23
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAML-DWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSD-LTDDSSLLVQAMELSGPR 395
            LELI+G +A +  + AN    ML DWVK++ +EKKLE LVD +L+  Y   E+E+++Q+ALLCTQ     RPKMSEVVRMLEGDGLAE+W   QK E      N  +     +D L   S+ L++    SGPR
Sbjct:  488 LELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEMPIHDFNYQAYPHAGTDWLIPYSNSLIENDYPSGPR 620          
BLAST of DR908872 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 3
Query:    3 LELISGLRALEFGKTANQKGAMLDWVKKIHQEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAEKWAASQKAEATRSRANEFSSSERYSDLTDDSSLLVQAMELSGPR 395
            LELI+G + ++ G    +KG +L WV+ +  EK+   +VD+DLK  +D + LEE+V++ALLCTQ  P+LRP+MS+V+++LE  GL E+     +A A        S S  YS+  ++ S +++A+ELSGPR
Sbjct:  493 LELITGHKMIDQGNGQVRKGMILSWVRTLKAEKRFAEMVDRDLKGEFDDLVLEEVVELALLCTQPHPNLRPRMSQVLKVLE--GLVEQCEGGYEARAP-------SVSRNYSNGHEEQSFIIEAIELSGPR 614          
The following BLAST results are available for this feature:
BLAST of DR908872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y2239_ARATH6.605e-3654.11Probable LRR receptor-like serine/threonine-protei... [more]
SERK2_ARATH1.683e-3158.33Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK1_ARATH8.355e-3157.58Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
BAK1_ARATH3.633e-2651.88BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
Y5129_ARATH6.851e-2549.24Probable LRR receptor-like serine/threonine-protei... [more]
SERK5_ARATH2.878e-2348.12Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH2.878e-2348.12Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y5457_ARATH2.063e-2141.98Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_17000 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908872 ID=DR908872; Name=DR908872; organism=Citrus sinensis; type=EST; length=569bp
TGCTTGAATTGATCTCTGGCCTAAGAGCTTTAGAATTCGGGAAGACGGCA
AACCAGAAAGGCGCTATGCTTGACTGGGTGAAGAAAATCCATCAGGAAAA
GAAACTTGAGATGCTGGTTGATAAGGACCTGAAGAACAACTATGACCGAA
TTGAGCTTGAAGAAATGGTACAAGTTGCTCTCTTATGTACTCAATACCTT
CCCAGTCTCAGACCTAAGATGTCTGAAGTTGTCCGGATGCTCGAAGGCGA
TGGACTTGCAGAGAAATGGGCAGCTTCTCAAAAAGCTGAAGCAACGAGAT
CCAGAGCCAATGAATTCTCCTCTTCAGAGCGATACTCTGACCTTACTGAC
GACTCTTCATTGTTGGTTCAAGCAATGGAGCTCTCTGGACCAAGGTGACA
TGACATGATGCTCCAAAGGCGCAGAAAATAAACTGTGATAAATGTTACAA
AGAATGTGTCGGAATGAGCTTGTTTTATGGTAGCAATATACCGAAGCTCT
AGCCCTTTTGTGTCAAATTCCTGATTGTACAGATTCGGATTGACAAGAAA
CCGAAACTAGTTAAGAGTG
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