CN189766

Overview
NameCN189766
Unique NameCN189766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.420e-92
Identity = 166/215 (77.21%), Postives = 183/215 (85.12%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            M RKFFVGGNWKCNGTSEEVKKIV+ LNEAE                     K+LLR+DFHVAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRALLNESN+FVGDK AYALS+GLKVIACVGETLEQRE+GST++VVA QTKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+ +NV A+VA S RIIYGGSVNG
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNG 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 4.938e-91
Identity = 165/215 (76.74%), Postives = 185/215 (86.05%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            MARKFFVGGNWKCNGT+EEVKKIV+TLNEA+                     KS LRSDF VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERRA+LNES++FVGDKVAYAL++GLKVIACVGETLE+RE+GST+ VVA QTKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRIIYGGSVNG
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNG 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.877e-90
Identity = 166/215 (77.21%), Postives = 182/215 (84.65%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            M RKFFVGGNWKCNGT+EEVKKI++TLN A+                     K+ LR DFHVAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERRALL ESN+FVGDKVAYALS+GLKVIACVGETLE+RESGST+ VVA QTKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRIIYGGSVNG
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNG 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 320.857 bits (821), Expect = 4.326e-87
Identity = 160/213 (75.12%), Postives = 174/213 (81.69%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSV 707
            M RKFFVGGNWKCNGT+++V+KIV TLNE +                     KS LR +FHVAAQNCWV+KGGAFTGEVSAEMLVNL +PWVILGHSERRALL ESN+FVGDKVAYALS+GLKVIACVGETLEQRE+GST+ VVA QTKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WL  N S EVA STRIIYGGSV
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSV 213          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 313.538 bits (802), Expect = 6.907e-85
Identity = 159/215 (73.95%), Postives = 173/215 (80.47%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            M RKFFVGGNWKCNGT+++V KIV  LNE +                     KS LR +  VAAQNCWV+KGGAFTGEVSAEMLVNLSIPWVILGHSERR+LL ESN+FVGDKVAYALS+GLKVIACVGETLEQRESGST+ VVA QTKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV G
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTG 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 304.679 bits (779), Expect = 3.208e-82
Identity = 153/215 (71.16%), Postives = 171/215 (79.53%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            M RKFFVGGNWKCNGT  +V+ IV+TLN  +                     K  LR +  VAAQNCWV+KGGAFTGEVSAEMLVNL IPWVILGHSERR+LL ES++FVG+KVAYAL++GLKVIACVGETLEQRE+GST+ VVAEQTKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WL  NVS EVA STRIIYGGSV G
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTG 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 9.335e-82
Identity = 152/215 (70.70%), Postives = 169/215 (78.60%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            M RKFFVGGNWKCNGT E+V+ IV TLN  +                     K+ LR +  VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERR+LL ES++FVG+KVAYAL++GLKVIACVGETLEQRE+GST+ VVAEQTKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WL  NVS EVA STRIIYGGSV G
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTG 215          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.722e-73
Identity = 134/154 (87.01%), Postives = 147/154 (95.45%), Query Frame = 3
Query:  252 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            VAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERRALLNE+N+FVGDKVAYALS+GLKVIACVGETLEQRE+G+T+ VVA QTKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRIIYGGSV+G
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSG 156          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.683e-71
Identity = 136/216 (62.96%), Postives = 151/216 (69.91%), Query Frame = 3
Query:   69 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            M RKFFVGGNWKCNGT E V KIV TLNE                        + L+ +  VAAQNCWV+KGGAFTGEVSA+ML NL I WVILGHSERR LL ESN+FVG K AYA S GL VIAC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WL  NVS EVA+ TRIIYGGSVNG
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNG 216          
BLAST of CN189766 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.498e-66
Identity = 126/220 (57.27%), Postives = 152/220 (69.09%), Query Frame = 3
Query:   60 IVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLXDNVSAEVAASTRIIYGGSVNG 713
            +V MA   KFFVGGNWKCNGT E + K+VS LN A                      KS L     ++AQNCW+ KGGAFTGE+S E L +L   WVILGHSERR ++ E N+F+G K AYAL++G+ VIAC+GE LE+RE+G T  V  +Q KA A+ + +WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WL  NVS EVA+ TRIIYGGSVNG
Sbjct:   64 VVAMAGSGKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQV--KSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNG 281          
The following BLAST results are available for this feature:
BLAST of CN189766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPJA3.420e-9277.21Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH4.938e-9176.74Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_PETHY1.877e-9077.21Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_MAIZE4.326e-8775.12Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ6.907e-8573.95Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE3.208e-8271.16Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU9.335e-8270.70Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA2.722e-7387.01Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP9.683e-7162.96Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL5.498e-6657.27Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002G05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189766 ID=CN189766; Name=CN189766; organism=Citrus sinensis; type=EST; length=715bp
GAGGGTGTTGATTTCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAA
CAAAATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTG
GAAATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGA
ATGAAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCT
CCGTTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCA
TGTTGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGG
AAGTTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGG
AGATAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTG
TTGGAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTG
GCTGAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGT
TGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAA
CCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTANA
GACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGG
TTCTGTAAATGGAGC
back to top