DR908869

Overview
NameDR908869
Unique NameDR908869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.019e-36
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 2
Query:    2 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            FGHKATSAGLK+QEAINFLEKKMKNDP+FT++ETVQTAIS LQSVLQEDFKA+EIEVGVV K+NPEFRVL+ +EIDEHLTAISERD
Sbjct:  161 FGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 2
Query:    2 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            FGHKATSAG KEQEAINFLEKKMKNDPAF+++ETVQTAIS LQSVLQEDFKASEIEVGVV KE+P FRVL+ EEIDEHLTAISERD
Sbjct:  161 FGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEIEVGVVKKEDPIFRVLTTEEIDEHLTAISERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.775e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 2
Query:    2 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            +GHKATSAG+KEQEA+NFLEKKMK +P+FTF ETVQTAIS LQSVLQEDFKA+EIEVGVV  ENPEFR L+ EEI+EHLTAISERD
Sbjct:  161 YGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHLTAISERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 2
Query:    2 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            +GHKATSAG+KEQEA+NFLEKKMK +PAFT+ ETVQTAIS LQSVLQEDFKA+EIEVGVV  ++P FR L  EEIDEHLTAISERD
Sbjct:  161 YGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.392e-32
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 2
Query:    2 FGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            FGHKATSAGLKEQEAINFLEKKMK+DP F+++ETVQ AIS LQSVLQEDFKA+EIEVGVV K++  FR L+ EEID+HLTAISERD
Sbjct:  161 FGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:  162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:  162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:  162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            G KAT+AG+K+ E+ +FLEKK+K    +TF++TV+TAI+ L +VL  DFK SEIEVGVV+ ENP+FR+L+  EID HL A++ERD
Sbjct:  162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246          
BLAST of DR908869 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.111e-18
Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 2
Query:    5 GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQT-----AISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 259
            G+KAT+AG KEQE+ NFLEKK K++P  +  ET+Q      AISTLQSVL  D K+S++E+G+ + +N +F +++ E+ID  LT ++ERD
Sbjct:  161 GYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVLGADLKSSDLEIGICTMDNRKFVIMTDEDIDSQLTKLAERD 250          
The following BLAST results are available for this feature:
BLAST of DR908869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PSA6_SOYBN1.019e-3687.21Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6_TOBAC6.605e-3688.37Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6A_ARATH2.775e-3482.56Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6B_ARATH1.989e-3280.23Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_ORYSJ3.392e-3280.23Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6_RAT3.518e-2158.82Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE3.518e-2158.82Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN3.518e-2158.82Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN3.518e-2158.82Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_DICDI8.111e-1850.00Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16997 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908869 ID=DR908869; Name=DR908869; organism=Citrus sinensis; type=EST; length=570bp
CTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCAATTA
ATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCAAGAA
ACTGTGCAGACTGCAATTTCCACCCTGCAATCAGTCCTGCAAGAGGATTT
TAAGGCGAGTGAGATTGAGGTTGGCGTGGTGAGCAAGGAGAATCCAGAAT
TCAGAGTTTTGTCCATCGAGGAGATCGATGAGCACTTGACTGCTATAAGT
GAACGAGATTAGGAGGTGGTTTCATGCCCAGTCACAAATGCTGAAACCAA
AAAACAAAAATGCTTTTCCCCTGTATCTTGAATTTATAATTTTAAGTGTA
TTCGGTAATACACACAGCCATTGCCCTCCAAAGCAGAAAACAAAACGTTG
AAAAACAAGTTATGTGACTATGCAGTGCCAACCAGGGGAAGTGCTTTGTG
CTAGTGGTAGCTGTTGACTTTTACTACTATATTGGCTTGATAGCGACTAT
TGACTAGTGCCTTTCATGGCCATTGTTATTATTATGATGAATGGCAATTT
TAGTGATTTCCTGCCTTATG
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