CN189762

Overview
NameCN189762
Unique NameCN189762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189762 vs. ExPASy Swiss-Prot
Match: SNP33_ARATH (SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.654e-40
Identity = 88/143 (61.54%), Postives = 108/143 (75.52%), Query Frame = 3
Query:  237 MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSS-YSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEKIREDATKTLVSL 662
            MFGL+KSP  + +HNSVD     SS+ NPFDSDDE DNK TL PSKRT+SEP+L      TNPF  + +++  + SS  SL S ++ +Y+N+FRDSGG+ENQSVQELE YAVYKAE+TTK V GCLK+AE IR DAT+TLV L
Sbjct:    1 MFGLRKSPANLPKHNSVD---LKSSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM---TNPFGGERVQKGDSSSSKQSLFSNSKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVML 137          
BLAST of CN189762 vs. ExPASy Swiss-Prot
Match: SNP30_ARATH (Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  306 SSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEKIREDATKTLVSL 662
            S  +N   ++   +   T+   +RTSSEP L T       FDDDD                  KY+N F DSGGL++Q+ +ELE YAVYKAE+TTK V+ CLKIAE IR D  +TL  L
Sbjct:    7 SPGNNKLPNESSNNKGGTITAGRRTSSEPILITPD-----FDDDD------------------KYKNGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEML 102          
BLAST of CN189762 vs. ExPASy Swiss-Prot
Match: SNP29_ARATH (SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  306 SSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEKIREDATKTLVSL 662
            +S  NPFD + E                        S NPFDDDD  +               ++ +  + SGG ENQ+VQELE YAVY +E+TTK V GCLK+AE+IR DA+KTLV L
Sbjct:    5 NSSWNPFDDEKE-------------------AAKSFSLNPFDDDDDDKEV-----------EKRFTSSLKPSGGKENQTVQELESYAVYNSEETTKTVQGCLKVAEEIRCDASKTLVML 93          
The following BLAST results are available for this feature:
BLAST of CN189762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNP33_ARATH2.654e-4061.54SNAP25 homologous protein SNAP33 OS=Arabidopsis th... [more]
SNP30_ARATH5.385e-1743.70Putative SNAP25 homologous protein SNAP30 OS=Arabi... [more]
SNP29_ARATH1.326e-1541.18SNAP25 homologous protein SNAP29 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189762 ID=CN189762; Name=CN189762; organism=Citrus sinensis; type=EST; length=663bp
GACGTTCGCTCCACGCGATTTATATCCGTGGCTCGCTCGCTCGCTCTTTC
TCGTTTAGAGTTTTAAACCCACCAAATCTTTCTTCACAACGTAAAGCTCT
TTCTTCGCAAAGTTTCATTTTGACTAATTCCTTGTGAGATTCTTGCGCTC
TTGCAAGATTTTCTGCAACATTTTCTCAGGAACATTGATTGATAGATCGA
TTTCTCTTCAGTTTGAATAATAGCTCTGCTTTAAGAATGTTTGGCTTAAA
GAAATCTCCTTTAAGGGTTGGTAGGCATAATTCTGTTGACCCCGGACACC
AGGTTTCTTCTCGGTCCAACCCGTTTGATTCTGACGATGAGTTGGATAAT
AAGCAGACTCTTAAACCCTCAAAAAGGACTTCTTCTGAACCCAACCTAAC
TACATCAAAAGTTAGTACTAATCCTTTTGATGATGATGATATAAAAGAGA
ACACTGCAGTGTCCTCATATTCCCTTACTTCAGCTGCGAGAAACAAATAT
AGGAATGATTTTCGTGACTCTGGTGGATTAGAGAACCAGTCTGTGCAAGA
ATTGGAGGATTATGCTGTTTACAAGGCAGAGGACACTACAAAGCAAGTGC
ATGGCTGCCTGAAGATTGCTGAAAAAATTAGAGAGGATGCTACTAAGACT
TTGGTAAGCTTGC
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