CN189757

Overview
NameCN189757
Unique NameCN189757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189757 vs. ExPASy Swiss-Prot
Match: NPL41_ARATH (NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3g63000 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.079e-86
Identity = 154/212 (72.64%), Postives = 188/212 (88.68%), Query Frame = 2
Query:  122 LLRIRSRDGLERVTVDGAHITVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRG-PSFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFI 754
            +LR+RSRDGLERV+VDG HITV++LKT+IQ QL+IP+ +QTLSTN+NLLLAKSPSD L FTDMA+P+  +SSLN++HGS+V+L+Y+GER +RG P+  PAGSFGRKMT++DLIA+QMRV RQE  HC+SVSFDRDCA+AFQ +VNE+LAFAVKRGGFMYG V ED +VEVNFIYEPPQQG E+ L ++RD EEEK VDAIA GLGM++VGFI
Sbjct:    3 MLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGERTIRGGPAVTPAGSFGRKMTVEDLIARQMRVGRQEKAHCDSVSFDRDCANAFQHFVNESLAFAVKRGGFMYGNVSEDGQVEVNFIYEPPQQGMEDNLILMRDSEEEKRVDAIALGLGMRRVGFI 214          
BLAST of CN189757 vs. ExPASy Swiss-Prot
Match: NPL42_ARATH (NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2g47970 PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.693e-85
Identity = 153/213 (71.83%), Postives = 187/213 (87.79%), Query Frame = 2
Query:  119 MLLRIRSRDGLERVTVDGAHITVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRG-PSFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLEDKRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFI 754
            M+LRIRSRDGLERVT +GAHITV++LKT+I  QL+IP+  QTLSTN++LLLAK+P+DLL FTD+ +P+ PLSSLN+ HGS+++L+YDGER++ G P   PAGSFGRKMT+DDLIA+QMRVTRQE  HC+SVSFDRD A+AFQ YVNE+LAFAVKRGGFMYGTV E+ +VEV+FIYEPPQQGTE  L ++RD +EEK VDAIA GLGM++VGFI
Sbjct:    2 MMLRIRSRDGLERVTAEGAHITVSQLKTLIADQLQIPLHKQTLSTNRDLLLAKTPADLLAFTDLTDPNLPLSSLNLGHGSMLYLAYDGERSIPGAPPVTPAGSFGRKMTVDDLIARQMRVTRQETSHCDSVSFDRDAANAFQHYVNESLAFAVKRGGFMYGTVTEEGQVEVDFIYEPPQQGTEANLILMRDADEEKRVDAIAMGLGMRRVGFI 214          
BLAST of CN189757 vs. ExPASy Swiss-Prot
Match: NPL4_ORYSJ (NPL4-like protein OS=Oryza sativa subsp. japonica GN=Os01g0377700 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.377e-54
Identity = 119/218 (54.59%), Postives = 155/218 (71.10%), Query Frame = 2
Query:  119 MLLRIRSRDGLERVTV-DGAHITVAELKTIIQSQLRIPVESQTLSTNQNLLLAKSPSDLLQFTDMANPDRPLSSLNISHGSIVFLSYDGERNVRGP----SFNPAGSFGRKMTMDDLIAKQMRVTRQENPHCESVSFDRDCADAFQQYVNETLAFAVKRGGFMYGTVLED-KRVEVNFIYEPPQQGTEEVLYILRDEEEEKLVDAIAAGLGMKKVGFI 754
            M+LRIRSRDG +R+TV D A  TV +L+ +I +++ +PV  Q LS +  LLL  S S  L    +A+P  PLSSL +S+GS V+LSY  +     P    + + AGSFG+KMTMDDLIA+Q+RVTRQE P C + SFDRD A+AFQ +V E+LAFA KR GF+YG V  D K V V+FIYEPPQ GTE+V+ ++RD +EE  VDAIA GLGM++VG +
Sbjct:    1 MILRIRSRDGTDRITVPDPAAATVGDLQRLIAARVTVPVPLQRLSLDPALLLPSSASAAL----LADPAAPLSSLRLSNGSFVYLSYPPDARSSQPPPPKALSAAGSFGKKMTMDDLIARQIRVTRQEAPLCAAASFDRDSANAFQLHVAESLAFATKRAGFLYGRVDADTKEVFVDFIYEPPQVGTEDVVQLMRDAQEEARVDAIAHGLGMRRVGLV 214          
The following BLAST results are available for this feature:
BLAST of CN189757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPL41_ARATH4.079e-8672.64NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3... [more]
NPL42_ARATH7.693e-8571.83NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2... [more]
NPL4_ORYSJ5.377e-5454.59NPL4-like protein OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189757 ID=CN189757; Name=CN189757; organism=Citrus sinensis; type=EST; length=755bp
GAGGCGAAAGCAGCAATAATCCCACCGGAGGTAACAAACCGACCCGAAAT
CACTACTTGTGCTGAAAGAAGCCTCGACCCCTGTTACCTCGATTCGAAAC
CCCAAAACCGCACCAAACATGCTGCTTCGCATCCGCAGCAGAGACGGCCT
CGAGCGCGTCACAGTCGACGGCGCACACATCACAGTCGCAGAACTGAAAA
CCATAATCCAATCGCAGCTCCGAATCCCCGTCGAAAGCCAAACCCTATCC
ACTAACCAAAACCTCTTATTAGCCAAATCACCCTCCGATCTCCTCCAATT
CACCGACATGGCCAACCCAGACAGGCCCTTATCTTCCCTCAACATCTCCC
ACGGCTCCATCGTTTTCTTATCCTACGACGGCGAGCGAAACGTCAGGGGC
CCCAGCTTCAACCCGGCCGGATCCTTCGGCCGGAAGATGACCATGGACGA
TTTGATCGCCAAACAGATGCGGGTCACCCGCCAGGAGAATCCGCATTGCG
AGTCCGTCTCCTTTGATCGTGACTGCGCCGACGCCTTTCAGCAGTACGTC
AATGAAACGCTGGCGTTTGCCGTCAAACGCGGAGGGTTCATGTACGGCAC
TGTCTTGGAGGATAAACGGGTAGAGGTGAATTTCATCTACGAGCCGCCTC
AGCAGGGGACGGAGGAAGTGCTGTATATTTTACGTGACGAGGAGGAGGAG
AAGTTAGTGGACGCGATTGCGGCTGGATTGGGTATGAAGAAAGTGGGGTT
TATTT
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