CN189754

Overview
NameCN189754
Unique NameCN189754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.236e-23
Identity = 55/121 (45.45%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  253 LQRELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 615
            +Q++L+ +V    +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE++   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  253 LQRELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 615
            +Q++L+ +V    +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_CANFA (Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  253 LQRELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 615
            +Q++L+ +V    +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = -3
Query:  259 LQRELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKA 615
            +Q++L+ +V    +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_CAEEL (Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 44/118 (37.29%), Postives = 74/118 (62.71%), Query Frame = -3
Query:  253 ELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 606
            + E +VN L  L+KD  K    R++  ++L E++ V  EL L+   + VYKLIG VLV+QDL EA + V KR+E+I +E KR++A++ D+ +K   +++ +  +Q+  Q +    A+A
Sbjct:    6 KFEEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQKSFQMMAQAAAQA 123          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = -3
Query:  280 LQRELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQ 615
            L ++++ ++     LQK   K  + R     QL EN+ VL EL LL     VYKL GPVLVKQ+L E+  NV KRIEYIS ELK     L+++E+     +E++ K QQ+ Q
Sbjct:    8 LYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQQQCQ 119          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_CAEBR (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16
Identity = 40/111 (36.04%), Postives = 74/111 (66.67%), Query Frame = -3
Query:  274 ELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSL 606
            + E +++ L  L+KD  K    R++  ++L E++ V  EL L++  + VYKL+GPVLV+QDL EA + V KR+E+I +E+KR++A++ D+ +K   +++ +  +Q+  Q +
Sbjct:    6 KFEEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQKAFQMM 116          
BLAST of CN189754 vs. ExPASy Swiss-Prot
Match: PFD6_DICDI (Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = -3
Query:  268 LRELQRELETKVNDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQA 624
            ++++Q +L    +     + ++ K    R K   QL ENE+V KE  LL   A +YKL GPVL KQ   EA   +  R++ I+  LK ++   +D+E+K   ++  IF+ Q +I+SL A
Sbjct:   15 IQQIQDQLIKARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAKIYKLNGPVLFKQTKEEAENTITSRLDIINNNLKTIETNFKDIEKKAMEQRNKIFEYQNKIRSLTA 133          
The following BLAST results are available for this feature:
BLAST of CN189754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFD6_BOVIN2.236e-2345.45Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV... [more]
PFD6_HUMAN3.814e-2345.45Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 ... [more]
PFD6_CANFA3.814e-2345.45Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 P... [more]
PFD6_MOUSE6.506e-2345.38Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 ... [more]
PFD6_CAEEL1.552e-1637.29Probable prefoldin subunit 6 OS=Caenorhabditis ele... [more]
PFD6_DROME2.027e-1642.86Probable prefoldin subunit 6 OS=Drosophila melanog... [more]
PFD6_CAEBR3.458e-1636.04Probable prefoldin subunit 6 OS=Caenorhabditis bri... [more]
PFD6_DICDI2.740e-1334.45Probable prefoldin subunit 6 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189754 ID=CN189754; Name=CN189754; organism=Citrus sinensis; type=EST; length=659bp
CCTTAAGCACATATGCATTTCATTGATTTACTTGGATAAACACAATAGTA
CTTTCACATAACACACACACAGACAAAATTGACACTGATTTTCATTCATA
ACAACCCACAATAACTGAAATAACGCTGATAATCTTGCTATAACGCACAA
CTATATAGCCTCAAAAATTAACAGTAAAGAACACCAAGTCGCCCTTGAGG
CAAAACAGAAACAGAGCTGTGGGCAAAGCGAACACTCCTACAAAGTTAAT
TAGGCCTTAGCTTTTCCTGCCTGAAGTGATTGTATCCTCTGTTGTACTTT
GAAGATCGCCTCCTTTTTGCTATTTTGTTTTTCTTCCAAATCCTGAAGAG
TTGCATCAAGTCGCTTCAACTCAGCAGAGATGTATTCAATTCTCTTGCGC
ACATTGGCATTAGCCTCTGCCAAATCTTGCTTCACAAGAACTGGACCAAT
CAATTTATACACATTTGCTCCTTCATTTAACAAACCCAGCTCCTTAAGGA
CGAGCTCGTTTTCTCCAAGCTGAATAGTGTACTTCTTTCTCACTTGATGA
TTTTTACCAATATCTTTTTGGAGTTTGCTGAGATCGTTAACTTTGGTTTC
GAGTTCACGTTGAAGCTCTCGAAGAGCTGCGGCCGATCCCATTGCTGCTG
CTTCTGCCT
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