DR908865

Overview
NameDR908865
Unique NameDR908865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 5.403e-38
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 242
            AR LQFVTGTSKVPLEGFKALQGISGPQ+ QIHKAYGAPERLPSAHTCFNQLDLPEY SKEQLQERLLLAIHEASEGFGF
Sbjct: 3601 ARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGFGF 3680          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 242
            AR LQFVTGTSKVPLEGFKALQGISGPQ+ QIHKAYG+PERLPSAHTCFNQLDLPEY SKEQ+QERLLLAIHEA+EGFGF
Sbjct: 3578 ARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFGF 3657          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.249e-26
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 242
            A+LLQF TGTSKVPL GFK L+G+SG Q+F IHK+YG+  RLP +HTCFNQLDLPEY + EQL+  LL AI+E SEGFGF
Sbjct: 3147 AKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTAINEGSEGFGF 3226          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            A+ LQFVTGTSKVPL+GF AL+G++G QKFQIH+   + +RLPSAHTCFNQLDLP Y S E+L+  LLLAI E SEGFG
Sbjct:  242 AKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 320          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            A+ LQFVTGTSKVPL+GF AL+G++G QKFQIH+   + +RLPSAHTCFNQLDLP Y S E+L+  LLLAI E SEGFG
Sbjct: 4297 AKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4375          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            A+ LQFVTGTSKVPL+GF AL+G++G QKFQIH+   + +RLPSAHTCFNQLDLP Y S E+L+  LLLAI E SEGFG
Sbjct: 4294 AKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4372          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            A+LLQFVTGTSKVPL GFK L G++G  KF IH+ YG+ +RLPS+HTCFNQLDLP Y S E L+  LLLAI+E  EGFG
Sbjct: 3178 AKLLQFVTGTSKVPLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDSYETLRGSLLLAINEGHEGFG 3256          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.800e-24
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            A+LLQFVTGTSKVPL GFK L G++G  KF IH+ +G+ ERLPS+HTCFNQL+LP Y S E L+  LLLAI+E  EGFG
Sbjct: 3188 AKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFG 3266          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.292e-23
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 242
            A+LLQFVTGTSKVPL GFK L+G++G  +F IH+ YG+ +RLPS+HTCFNQLDLPEY + E L+ +LL AI   S+ FGF
Sbjct: 3946 AKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLPEYENYETLRSQLLKAITAGSDYFGF 4025          
BLAST of DR908865 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.636e-20
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 3
Query:    3 ARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 239
            ++LLQF TGTS++P+ GF+ LQG  GP+KF I KA G P++LP AHTCFN+LDLP+Y SK+ L E+L LA+ E + GFG
Sbjct:  708 SKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKA-GTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAV-ENTVGFG 784          
The following BLAST results are available for this feature:
BLAST of DR908865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
UPL1_ARATH5.403e-3895.00E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH5.974e-3791.25E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
PTR1_SCHPO1.249e-2670.00E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
HUWE1_RAT8.947e-2569.62E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE8.947e-2569.62E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN8.947e-2569.62E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
TOM1_ASHGO1.169e-2468.35Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
TOM1_YEAST5.800e-2467.09E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
TOM1_NEUCR1.292e-2363.75E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]
PUB3_SCHPO6.636e-2059.49E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16993 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908865 ID=DR908865; Name=DR908865; organism=Citrus sinensis; type=EST; length=570bp
TGGCTAGACTGCTTCAATTTGTCACTGGAACTTCAAAGGTTCCACTGGAG
GGTTTCAAGGCATTGCAGGGTATCTCTGGTCCCCAGAAGTTCCAGATTCA
CAAGGCATATGGAGCCCCTGAGCGGCTGCCTTCGGCTCATACATGCTTCA
ATCAACTAGATCTTCCTGAGTATTCGTCCAAGGAACAGCTTCAAGAGCGC
TTGTTGCTTGCTATACATGAAGCCAGTGAAGGTTTTGGCTTTGGTTAAAT
ATTCTTTTACGTCAGTGTTGCGCCAGCAGCACCAGCCGTCAGACTCCACA
TTTCCATGTACATAAGCCAACTGATTCAGGTAGATAGAAATATCGATAAG
TTGGGGGACAAGCCGCAAATCATTGTCAAAATCAGATTGTAGAGGGATTC
CTGGAAGTATCTCGGCATAACCGCAATGGTAGTTATGCTTTGATCAAAGT
GGTGGGGTGGGAAGCTCTTCATTATTCATGTTGAGCTGGGAATTTTTTTT
CTCTGGCTTATTTAAAGCCCAATGGATTCAAAAGTGGGTATAGAATGTTG
ATGGATGATGGTATCATTGT
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