CN189753

Overview
NameCN189753
Unique NameCN189753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.450e-86
Identity = 147/181 (81.22%), Postives = 165/181 (91.16%), Query Frame = 2
Query:  188 MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLG 724
            MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LN +FRGAASSDSVWE KLP NYQDLLDL+PPERY +LSKK+IFA+LSRP+PFDD NKEVW+DRVTGRVC++IS + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  VY++SFR+HLG
Sbjct:    1 MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLG 181          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.094e-52
Identity = 97/176 (55.11%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  197 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLG 724
            S SS   +   + PGLGD+PE+CVA +   L P EIC  ++LN AFRGA+ +D VWE+KLP NY+D+L+ +      NL K+ ++A LSR   FDD  K+VW+D+ T  VCLSIS K ++ITGI+DRRYW+ IPT+ESRF  VAYLQQIWWFEVDG + FP P   Y++ FRL LG
Sbjct:   13 SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLG 188          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.659e-49
Identity = 92/176 (52.27%), Postives = 126/176 (71.59%), Query Frame = 2
Query:  197 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLG 724
            +LSS   + + + PGLGD+PESCVA +   L P EIC  ++LN AF GA+ +D VWE+KLP +Y+ +L+ +      NL K++IF  LSR   FD+GNK+ W+D+ TG +CL  S K ++ITGI+DRRYW+ IP+++SRF  VAY+QQIWWF+VDG + FP PA  Y+V FRL LG
Sbjct:   11 NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLG 186          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.106e-48
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 2
Query:  188 MGASLSS------LTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLN-LSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLG 724
            MGA++S         D+  S    L D+PE+CVA +   L PPEIC LARLN  FR A+S+D +WE+KLP+NY+ +   +  E  L  L KK+++A LS+P  FDDG KE+W+D+ TGR+CLSIS+KA+ ITGI+DRRYW+ IPT+ESRF   AY+QQIWWFEV G  +   P+  Y++ FR+ LG
Sbjct:    1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLG 186          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.042e-43
Identity = 90/188 (47.87%), Postives = 124/188 (65.96%), Query Frame = 2
Query:  188 MGASLSSLTDNGESMGP--GLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERY-------LNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLG 724
            MGA+ SS+  +    G   GL D+PE+C+  +FMY+ PPEIC LAR+N +F  A+ SD+VWE+KLPSNY+ L+  +  ++        L   KKEI+A L RP  FD G KE WLD+ +G+V L+IS KAM ITGI+DRRYW  I ++ESRF  + YL+QIWW E  G ++F      Y++ F++ LG
Sbjct:    1 MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLG 188          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  254 PESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 664
            PE C++ +  +  P + C  A ++  F     SD +WE  LP++Y+ L+   PP R  +  K+  F+L + PV FDD  K VWL++ +G+ CL +S   ++I   ++ +YW WIP  ESRF  VA L+ + WFE+ G
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRG 151          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  233 GPGLGD-IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS-TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 664
            GP L D +PE C++ +  + +P + C  A ++  F  A +SDSVW+  LPS+Y     L+PP R  +  K+  FA+   PV  +DG K  WL++  G+ C  +S  K+M IT +   +YW WI   E+RF  V  L  + WFEV G
Sbjct:   38 GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYS---SLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRG 180          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  221 GESMGPGLGD---IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 664
            GE + PG      +PE C++ +  + +P + C  A ++  F  A SSD VW+  LP  Y+ L+        +  SKKE+ FAL   PV  +DG K  WL++ +G+ C+ +S+K + IT      YW WI   ESRF+ +A L  + WFE+ G
Sbjct:   51 GEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVS----RSRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRG 198          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 51/142 (35.92%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  242 LGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 664
            L D+PE CV+ +  + +P + C LA ++  F  A  SD VWE  +P  Y+ L+      ++L  SKKE+ FAL  + V  DDG K +W+++   + C+ IS   +AI      + W WIP  ++RF  VA L ++  FE+ G
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFL--SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRG 175          
BLAST of CN189753 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  173 KLKIEMGASLSSLTDNGESMGPGLG----------DIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 664
            K++  +G+S      + ES+G G G          D+PE C++ +  + +P ++C  A ++ +F  A   DS+WE  LPS Y+ L+   PP R  +  K   F L   PV  +DG K  WL+  +G+ C+ ++ K + ITG  +  YW WI   ES F  V  L     F++ G
Sbjct:   12 KIRQVLGSSSKVQKHDVESIGGGGGEIVPGHSPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLI---PPWRVFSSKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGG 182          
The following BLAST results are available for this feature:
BLAST of CN189753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2A15_ARATH6.450e-8681.22F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH6.094e-5255.11F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH1.659e-4952.27F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH9.106e-4851.61F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH1.042e-4347.87F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
P2B10_ARATH3.723e-2537.23F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
PP2B2_ARATH3.151e-2438.36Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
FB95_ARATH3.484e-2336.18F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B8_ARATH1.121e-2135.92Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
PP2B6_ARATH1.239e-2032.18Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189753 ID=CN189753; Name=CN189753; organism=Citrus sinensis; type=EST; length=724bp
GAGGTAACCAAACATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCGCTTTATCCTTCAGTCTCTTCTCCACCATGACGACGAGTTAGGCATA
AGCAACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCT
TTGGTAAATTCAGTAAAGTAATAAATTAAAAATAGAAATGGGGGCGTCGC
TATCGAGCCTGACCGACAACGGAGAGAGCATGGGGCCGGGACTGGGAGAC
ATACCGGAGAGCTGCGTGGCGTGCGTGTTCATGTACTTGACGCCGCCGGA
GATTTGCAATCTCGCCAGATTAAACCACGCTTTCCGCGGTGCGGCGTCGT
CTGATTCCGTGTGGGAAAACAAGCTCCCTTCTAACTATCAAGATCTGCTC
GATTTGATGCCTCCTGAACGCTACCTTAACTTGTCCAAAAAAGAAATTTT
TGCCCTCCTCTCCCGCCCGGTTCCCTTCGATGATGGCAATAAGGAAGTGT
GGTTAGATAGAGTGACGGGAAGAGTTTGCTTGTCAATATCAACAAAGGCT
ATGGCAATCACCGGAATTGAGGATCGCAGATATTGGAATTGGATTCCCAC
TGAAGAATCAAGATTCCATGTGGTGGCGTATTTGCAACAAATATGGTGGT
TCGAGGTGGATGGGGTAGTGAAGTTTCCACTTCCTGCTGATGTCTACACC
GTGTCATTCAGGCTTCATCTTGGA
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