DR908863

Overview
NameDR908863
Unique NameDR908863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I DV  D  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE+ L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIYTGKASNLDKMADDLLAAADKYALERLKVMCEEALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 42/127 (33.07%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 42/127 (33.07%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 42/127 (33.07%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 42/127 (33.07%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L S L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOLA_DANRE (Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKD 562
            +RSPVF AM ++EMEES+   + ISDV  +  +  + ++YT +A   E++A  LL  A+KY ++ LK  CE+ L + L+ +N       A  H+A+QL   A+       D + +C   R+L  KD
Sbjct:  220 ARSPVFNAMFEHEMEESKKNRVDISDVEPEVFKEMMGFIYTGKAPNLEKMADSLLAAADKYALERLKVMCEEALCNSLSVENVADTLILADLHSAEQLKAQAI-------DFINRCSVLRQLGCKD 338          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 41/127 (32.28%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDP 565
            +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+KY ++ LK  CE  L + L+ +N+      A  H+A QL   A+  I  +   + +   ++ +V   P
Sbjct:  220 ARSPVFSAMFEHEMEESKKNRVEINDVEAEVFKEMMFFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCTSLSVENAAEILILADLHSADQLKTQAVDFINYHASDVMETSGWKSMVASHP 346          
BLAST of DR908863 vs. ExPASy Swiss-Prot
Match: SPOLB_DANRE (Speckle-type POZ protein-like B OS=Danio rerio GN=spoplb PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  185 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQVKHLKAYCEKFLVSKLNWDNSVVNYAFAHQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKD 562
            +RSPVF AM +++MEES+   + ISDV  D  R  + ++YT +A   E++A +LL  A+KY ++ LK  CE+ L + L+ +N       A  H+A+QL   A+       D + +C   R+L  KD
Sbjct:  220 ARSPVFNAMFEHKMEESKKNRVDISDVEPDVFREMMVFIYTGKAPNLEKMADNLLAAADKYALERLKVLCEEALCNSLSVENVADVLILADLHSAEQLKAQAI-------DFINRCSVLRQLGCKD 338          
The following BLAST results are available for this feature:
BLAST of DR908863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SPOP_XENTR1.691e-1533.86Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA1.691e-1533.86Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA1.691e-1533.86Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
SPOP_PONAB1.096e-1433.07Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE1.096e-1433.07Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN1.096e-1433.07Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN1.096e-1433.07Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOLA_DANRE1.096e-1435.71Speckle-type POZ protein-like A OS=Danio rerio GN=... [more]
SPOP_DANRE1.432e-1432.28Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
SPOLB_DANRE1.870e-1436.51Speckle-type POZ protein-like B OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16991 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908863 ID=DR908863; Name=DR908863; organism=Citrus sinensis; type=EST; length=570bp
AGATCTTAAAGCTAAAGTCGCCTTTTTAAGGTTTTGGTCTCCACTCGATC
ATCATCATCATCATCATCACAGCAGTAGGTCCCACTGCGGACCTTGTTAT
ACCGACGTCGTTTTGGTCGCCGCCTCGGAATCCGGCCCTGCTGGCCCCGC
CGTTCCCGTCCCCGCTCATAAGGCCGTTTTGGTGAGTCGTTCTCCAGTGT
TTAAAGCCATGCTAGATAATGAAATGGAAGAAAGTCGGAGTGGCACTATA
AAGATCAGTGATGTATCATATGATGCCCTTCGTGCATTTGTCAATTATTT
GTATACTGCAGAAGCTTGCCTTGATGAGCAATTGGCCTGTGACCTTTTGG
AGTTGGCTGAAAAATATCAGGTGAAGCATCTTAAAGCATACTGTGAGAAG
TTCCTGGTATCCAAACTGAATTGGGACAATTCTGTTGTGAACTATGCTTT
TGCGCACCAGCACAATGCAAAGCAGTTGCTTGAAGCAGCACTGTCATTGA
TCACGGACAACATGGACAAGCTTACCAAGTGCGAGGAGTATAGGGAGCTC
GTGGAGAAGGATCCCCCGAC
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