CN189751

Overview
NameCN189751
Unique NameCN189751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189751 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.634e-55
Identity = 105/148 (70.95%), Postives = 129/148 (87.16%), Query Frame = -1 
Query:  261 AKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 704
            AKQ+GLR++EER+++D SPE P++ IQVQI NVES FA A+S++G+I +EG+VK GVPHLT VGSF VDVSLEG++ILCRQVDQPGMIG+VGNILG +NVNV+FMSVGR   RK A+MAIGVDE+P  +TL++IG V AIEEFVFLKL
Sbjct:  477 AKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624
[Close]
BLAST of CN189751 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 36/126 (28.57%), Postives = 68/126 (53.97%), Query Frame = -1 
Query:  261 VQIANVESKFASAI-----SESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 623
            V+ +  E K+ +AI     S+  +  + G + +  P + +V  +EV    EG + + + +D+PG IG+V   LG   +N++ M VGR  P   +VM + +D    +E ++KI ++P I++   + L
Sbjct:  399 VESSTSEEKYGNAIKITAESDKKKFSIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHIDRPGTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKDVAVINL 524
The following BLAST results are available for this feature:
BLAST of CN189751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SERA_ARATH5.634e-5570.95D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA2.927e-1128.57D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189751 ID=CN189751; Name=CN189751; organism=Citrus sinensis; type=EST; length=704bp
ACGTAGCAGACTAAAGAAAACTTCAATTTAAGATGATAACAACTCGATTA
AAGTACACACAACAAACCCTTTCTTCGCAAAGCACAATTAATTATTCATT
TATCTTTCCTAAAACTGCCAGCCTAACAAAGAACAGTAAAATGAAAGTCC
TAAAAATCGTGCACTACAATGCGGTAAAGACACCCATTTCTCTCTCTCCG
AGGACGGAAAAAATAATAGCATAAAAAATTTGGATGTGGTGGTGACGCTG
AGACACATTACAACTTAAGGAAAACAAACTCTTCTATGGCGGGAACATCA
CCAATCTTTTTCAATGTTTCTTTGCGGGGTTGTTCATCCACTCCAATTGC
CATCACCGCATGCTTCCGCGGAGCAACCCTTCCAACACTCATGAAACTGA
CATTCACATTCTCACTTCCCAAAATATTTCCCACTTTGCCGATCATACCT
GGCTGATCAACCTGTCTGCAGAGTATGATGCTGCCTTCCAAACTCACATC
CACCTCAAAAGATCCTACCTTTGTCAAATGTGGAACTCCATCCTTCACTC
GTCCCTCGACCTTGATCTCCCCAGACTCGGATATGGCACTGGCAAATTTT
GATTCCACATTGGCAATCTGAACCTGGATGAATTCGAGTGGACTCTCAGG
TGAACCATCTAGGAGAATTCGTTCTTCAGTTAACCGGAGGCCTCTCTGTT
TGGC
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