DR908862

Overview
NameDR908862
Unique NameDR908862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_XENLA (Coiled-coil domain-containing protein 130 OS=Xenopus laevis GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.380e-25
Identity = 66/167 (39.52%), Postives = 101/167 (60.48%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRKDKRALI 481
            + F MK   C + I +QTDP +C+YVI+SGAQRK E +D++D E +     E++ +L +D  +RLEH   D  K + A P L ++Q +    + DD+A+N  LR+K R +KK++ EEE    A   K  L L+L+P  +ED   AA +K+ S   +E+ +K KR+ I
Sbjct:   85 YRFRMKCHLCVNYIEMQTDPASCDYVIVSGAQRKEERWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSELQEVQSA-WKDDFAINSLLRSKFREEKKQIKEEEERDQALLTKASLDLKLVPEVEEDKKIAALLKYRSLESYEQKQKKKRSEI 250          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_BOVIN (Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.380e-25
Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRKDKRALI 481
            + F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ED E +     E++ KL  D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR + R +KK + EEE    A   K  L + L+P T++D   AA +KF +   +E  +K KR  I
Sbjct:   85 YRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNSMLRKRFREKKKAMQEEEERDQALQAKASLAIPLVPETEDDRRLAALLKFHTLDSYEDKQKLKRTEI 250          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_HUMAN (Coiled-coil domain-containing protein 130 OS=Homo sapiens GN=CCDC130 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.245e-25
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRKDKRALI 481
            + F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ D E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR + R +KK + EEE    A   K  L + L+P T++D   AA +KF +   +E  +K KR  I
Sbjct:   85 YRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLAALLKFHTLDSYEDKQKLKRTEI 250          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_RAT (Coiled-coil domain-containing protein 130 OS=Rattus norvegicus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.910e-23
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRKDKRALI 481
            + F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR   R +KK + EEE    A   K  L + L+P +++D   AA ++  +   +E  ++ KR  I
Sbjct:   85 YRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKANLAIPLVPESEDDRRLAALLRLHTLDSYEDKQRMKRTEI 250          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_MOUSE (Coiled-coil domain-containing protein 130 OS=Mus musculus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.910e-23
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRKDKRALI 481
            + F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+ALN  LR   R +KK + EEE    A   K  L + L+P +++D   AA ++  +   +E  ++ KR  I
Sbjct:   85 YRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKASLAIPLVPESEDDRRLAALLRLHTLDSYEDKQRMKRTEI 250          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_DANRE (Coiled-coil domain-containing protein 130 homolog OS=Danio rerio GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.866e-22
Identity = 64/169 (37.87%), Postives = 97/169 (57.40%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEE----AASRKLGLGLRLLPSTKEDACAAAHVKFSS--KFEKNRKDKRALINA 487
            + F MK   C + I +QTDP  C+YVI+SGAQRK E +D+ + E +      E+ KL +D  Y+L+H   D +K + A P L ++Q    G + DD+ LN ALR K R++KK + EEE    A   + GL + L+P  +ED   A+ + F S   +E  ++ KR  I++
Sbjct:   85 YRFRMKCHLCVNYIEMQTDPATCDYVIVSGAQRKEERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNELQEHQSG-WKDDFQLNSALRRKFRTEKKVIAEEEEKDNAVRLRTGLSIPLVPEREEDKKLASLLTFQSPDSYEDKKQWKRQEISS 252          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_DROME (Coiled-coil domain-containing protein 130 homolog OS=Drosophila melanogaster GN=CG15084 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.059e-17
Identity = 52/164 (31.71%), Postives = 86/164 (52.44%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFD-VEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASRKL----GLGLRLLPSTKEDACAAAHVKFSSKFEKNRKDKRAL 478
            + F MK   C +   IQTDP N +YVI+SGA+R+   +D +++ + +    + ++    D  Y+LEHQ  D +   +A P L ++   +   + D Y  N  LRA+ R QKK +  ++   R+L     L + LLP T +D   AA +K  +K    R+ ++ L
Sbjct:   84 FKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREMAALMKLQTKSALERESEQRL 247          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_DICDI (Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium discoideum GN=DDB_G0281599 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.609e-16
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 2
Query:    2 WSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPA--------------DEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASRKLGLGLRLLPSTKEDACAAAHVKFSS-----KFEKNRKDKRALI 481
            +SF MK   C +Q  IQ DPKN +Y +ISG +++ E+F+ ED+   ELP+              +      +D   +LE+++ D++K K+   +L ++Q I   R  +DY L+  +R   R +KK    E    +  G+ + LL   ++D   A  + F+S     K +++ K KR LI
Sbjct:   84 YSFKMKCHQCSNQFEIQNDPKNTDYKLISGLKKRIEQFNPEDS---ELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDIEKGKKESTQLEKLQEIMTNRTINDYQLSSIMRKSFREKKKEDQIELERQKSKGIMIPLLKENQDDIDTAKDIDFNSNSLKRKLDESNKLKRELI 259          
BLAST of DR908862 vs. ExPASy Swiss-Prot
Match: CC130_CAEEL (Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis elegans GN=ZK1307.9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    8 FTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQKKRVTEEEAASR----KLGLG-LRLLPSTKED 409
            F MK   C +  VI+TDPKN +Y ++ G  R+   FD  D   +         KL +D  ++ EH+  D  K    E R+ +++ I + R  DD+  N  LRA+ R++KK + E  A       KL +G  +LLP T+ED
Sbjct:   87 FRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQELRFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQE-RMRDDFTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEED 225          
The following BLAST results are available for this feature:
BLAST of DR908862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CC130_XENLA1.380e-2539.52Coiled-coil domain-containing protein 130 OS=Xenop... [more]
CC130_BOVIN1.380e-2542.51Coiled-coil domain-containing protein 130 OS=Bos t... [more]
CC130_HUMAN5.245e-2541.92Coiled-coil domain-containing protein 130 OS=Homo ... [more]
CC130_RAT4.910e-2339.52Coiled-coil domain-containing protein 130 OS=Rattu... [more]
CC130_MOUSE4.910e-2339.52Coiled-coil domain-containing protein 130 OS=Mus m... [more]
CC130_DANRE1.866e-2237.87Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DROME1.059e-1731.71Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DICDI2.609e-1630.17Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_CAEEL7.857e-1334.29Coiled-coil domain-containing protein 130 homolog ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16990 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-15_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908862 ID=DR908862; Name=DR908862; organism=Citrus sinensis; type=EST; length=570bp
ATGGAGTTTTACGATGAAGTCTCCTTGCTGCAAACATCAGATTGTTATCC
AGACAGATCCAAAGAATTGTGAGTATGTAATTATTAGTGGAGCTCAGCGA
AAGACAGAGGAGTTTGACGTTGAGGATGCAGAGACTCTTGAACTCCCTGC
AGATGAGGAAAGGGGTAAGCTTTCGGATCCATTTTATCGTCTTGAGCACC
AGGAAGCTGACCTGCAGAAGAAGAAAGAAGCTGAGCCAAGACTGGTGCAA
ATTCAGAGAATATCTGATGGCAGGTTTTCAGACGACTATGCACTAAACAA
GGCTCTCAGGGCCAAACTTAGATCTCAGAAGAAGAGAGTCACCGAAGAGG
AGGCTGCTTCAAGAAAATTAGGCCTTGGCTTACGACTTCTTCCGTCGACT
AAGGAAGATGCTTGTGCTGCTGCACATGTTAAGTTTTCTTCTAAGTTTGA
AAAAAATAGAAAGGACAAGCGAGCTTTGATTAATGCTGCTTCGATCTTTT
CTGGTTCCTCGATATCAAGTTCGAAACAACTGGAGCTAGAAGCCAAGAGA
AGGAAAATCAATGCAGGTGC
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