CN189749

Overview
NameCN189749
Unique NameCN189749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189749 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  297 NIRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVRG 503
            NI+ S   KF VD++L  +V  FK  +A KC +P  QQR+IY GRILKD QTL    ++  HTVHLV+G
Sbjct:    5 NIKSSTDNKFDVDVELGITVADFKKVIATKCSIPADQQRIIYSGRILKDHQTLDEIKIQDGHTVHLVKG 73
[Close]
BLAST of CN189749 vs. ExPASy Swiss-Prot
Match: DSK2_SCHPO (Deubiquitination-protection protein dph1 OS=Schizosaccharomyces pombe GN=dph1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 29/67 (43.28%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:  300 IRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVR 500
            I+ +N  K++V +D ESSV   K A+A   ++  ++QRLIY GR+LKD+++LK+Y ++  H++HLV+
Sbjct:    8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVK 74
The following BLAST results are available for this feature:
BLAST of CN189749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBQL_DICDI5.387e-1452.17Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
DSK2_SCHPO4.268e-1143.28Deubiquitination-protection protein dph1 OS=Schizo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002F17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189749 ID=CN189749; Name=CN189749; organism=Citrus sinensis; type=EST; length=649bp
GACGTTTTTACTTAAAACTAAACTCTTTCTCTCTCACACGCGATTCCCTC
ATACATACAAATTTCGTTTTTTTTTTTTCCTCTCTTTCTATGATCCGATT
TCGATTTATTAATATATACTAATATAGAAATAAATAAATAAATATTTTTT
AAAGGGTTAGGGTTTCGTAAATTTGATCGATCGGCTTGCTTTTTGTTTTA
TTTATTTTCAAAGTTATTGGATTCGTTGGGCCTCCGGCAGGGATGGGGGC
TGGAGATGAGGTAAGCGAATCGAGCGGAGGAGAGGGAGTAAAGGTGAATA
TCCGATGCTCGAACGGCACAAAATTTTCGGTGGATATCGATCTGGAATCC
AGCGTTGAAACATTCAAAGCGGCGTTGGCGGAAAAGTGCGAGGTTCCGCC
TCAGCAACAGCGGTTGATTTATAAAGGTCGGATCTTGAAGGACGATCAAA
CCCTCAAAAGCTATGGTTTGGAGGCAGATCACACTGTGCACTTGGTTCGT
GGTTTTGCACCTGCTGCATCTACAAACAATGCTGCGCCAACCAACTCTGG
AGGTTCAACTACTACTCCAAACAGCACAAGGCCCGTGAGTACTAATGAAG
GTGATGCTCTTGGAGGAGCTGGTCTTGGAGCTTCTCTGTTTCCTGGACT
back to top