CN189748

Overview
NameCN189748
Unique NameCN189748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189748 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 69/168 (41.07%), Postives = 89/168 (52.98%), Query Frame = -2 
Query:  269 MMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSXXXXXXXXXXXXXPNMG------LEMLMNMFGGLGA--------GSLAVPNRSDVPPEQLYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLL 730
            MMQ L+S+P  M Q++ +NPQLR M+DSN QLRE + NPEFL  +TNPE M  M+ LQQ + T                      MG           NMFGG+G          S   P  +  PPEQ +  QL QL+E+GF D   NI AL +T GN++ A++RLL
Sbjct:  355 MMQRLMSDPAMMQQMITMNPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPGGMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPVNQEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINLAIDRLL 522
The following BLAST results are available for this feature:
BLAST of CN189748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBQL_DICDI3.420e-2641.07Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189748 ID=CN189748; Name=CN189748; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTTTTTTTTTTCCAACAATTCATATGACAAATCTTAATACCGAGT
ATGTACAGTGACACTCAGGTCCGACAGAACTCTCTAGAAAGAGAGCAAGT
ACACAGACAAGTTTTCAGCCCTTACTATGATATATAACTAAAATTATTCA
TACCCAAAATGGGCTTTGAATATGACTCCAGTTCAACCGATTGATCCCCA
CCAGTCCTTATCACGGCACTAACCAGGTGATATTAAACATTGATAGCAAC
CTACTGACCAGAATTCCCCAAGAGTCGCTCCACTGCAGCATGGACATTTC
CAGCAGTTGCAATTAAAGCCCGTATATTTTCTTGTGTATCAAAGAAACCC
ATTTCTTGAAGTTGTGACAACTGGGTGGCATATAATTGCTCTGGAGGCAC
ATCAGATCTGTTAGGAACAGCTAGGCTGCCAGCCCCAAGTCCACCAAACA
TGTTCATTAACATCTCCAACCCCATGTTAGGAGTCCCTGTGCCTCCACCA
GTCTGGCCTGGTTGCTGCGTTGACTGTGCCCGACCAAGTTGAGTCAAGAG
AAATTGCTGCAAAGTCACCATTTGCTGCATTGTCTCAGGATTAGTCAACT
GACGAAGAAATTCAGGATTTTGTATCATTTCTCTCAGTTGAGAATTGGAA
TCAACCATGCTGCGCAGCTGTGGATTAAGACCAAGAATCTGGTTCATGTA
CTGGGGATTGGAGAGAAGGCTTTGCATCATT
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