DR908861

Overview
NameDR908861
Unique NameDR908861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.384e-40
Identity = 81/108 (75.00%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            +S+Q+ A++K L+G+  YCVR++AEALE+IPYTLAENAGL+P++IVTELRN+HAQGEINSGINVRKG ITNIL+ENVVQPLLVSTSA+TLA E V M+LKIDDI T R
Sbjct:  426 VSQQVTAFSKTLTGITSYCVRAYAEALEIIPYTLAENAGLHPISIVTELRNKHAQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIATAR 533          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.270e-36
Identity = 76/108 (70.37%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +++ LSGME YC+R+FA+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  435 LALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVNTR 542          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.270e-36
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 2
Query:   11 QLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            QL A A+ L G++ YC R+FA ALEVIP TLAENAGLNP+A VTELRNRHAQGE N+GINVRKG IT+IL ENVVQPLLVSTS+ITLA+E VR ILKIDDI+
Sbjct:  428 QLAAHAQTLEGVDAYCFRAFANALEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDII 529          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.965e-36
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +++ LSGME YCVR+FA+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  432 LALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.965e-36
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +++ LSGME YCVR+FA+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  432 LALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +++ LSGME YCVR+FA+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  432 LALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +++ LSGME YCVR+FA+A+EVIP TLAENAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  432 LALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 539          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 73/108 (67.59%), Postives = 90/108 (83.33%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +++ L GME YCVR++++ALEVIP TLAENAGLNP++ VTELRNRHAQG+  +GINVRKG I+NI+EE VVQPLLVS SA+TLA E VR ILKIDD+V  R
Sbjct:  429 LAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRHAQGDKMAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVVNAR 536          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.199e-31
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query:   26 AKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            A+ L G E  C+R+F+EALE+IP TLAENAGLN + +VTELR+RHA GE  +GINVRKG +TNILEENV+QPLLV+ SAI LAAE  +MI+KIDDI   R
Sbjct:  428 ARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDITLAR 527          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.688e-29
Identity = 63/97 (64.95%), Postives = 79/97 (81.44%), Query Frame = 2
Query:   26 AKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            A+   G  +YC R+FA+ALE+IPYTLAENAGL+P+  VTELRN HA G  + G+NVRKG +T+++EE+VVQPLLV+ SAI  A+ECVR ILKIDDIV
Sbjct:  440 AQTQHGATQYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536          
The following BLAST results are available for this feature:
BLAST of DR908861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
TCPD_DICDI3.384e-4075.00T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_BOVIN2.270e-3670.37T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_AEDTR2.270e-3676.47T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_RAT2.965e-3671.30T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE2.965e-3671.30T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_PONAB3.872e-3671.30T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN3.872e-3671.30T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_TAKRU2.125e-3467.59T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_SCHPO2.199e-3167.00T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_CAEEL2.688e-2964.95T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16989 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-14_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908861 ID=DR908861; Name=DR908861; organism=Citrus sinensis; type=EST; length=570bp
GTTGTCAAGGCAGTTGGGAGCATGGGCAAAGGCATTGTCCGGCATGGAAA
GGTATTGTGTGAGGTCATTTGCAGAGGCACTTGAGGTTATTCCCTATACT
TTGGCTGAGAATGCTGGGTTGAACCCGCTTGCCATTGTGACTGAACTGAG
GAACAGGCATGCACAAGGGGAAATCAATTCTGGAATCAATGTGAGGAAGG
GGCAGATTACCAATATTTTGGAGGAGAATGTGGTGCAGCCACTGCTTGTG
AGCACAAGTGCAATAACACTGGCTGCAGAGTGTGTAAGGATGATTTTGAA
GATTGATGACATCGTTACTGTGAGGTAGTTTTGCATCCAAAGATGAAAGT
GTGTTCCCTACTTATGTTTTGCGTCCTTGTATTATCTGAATTAGTAAGCT
CTGTTTTAGGATTGATTGCTGTTAAGAGTTTTGACTTTGTTATTTTTGTT
GCCAAATATTTGGTTTGAATTTGCTGTTTTATGGTTAATTAGCAGTCGAA
TGACTGATTAACTACTATTTCAGCCTTTATATGTTTTACCTTGTGAGAAG
CTCTAATCAGATCTATGCTT
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