CN189746

Overview
NameCN189746
Unique NameCN189746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189746 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = -3 
Query:  292 VAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 672
            VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  198 VAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321
[Close]
BLAST of CN189746 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = -3 
Query:  292 VAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 672
            VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  200 VALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323
[Close]
BLAST of CN189746 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = -3 
Query:  325 LRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 636
            ++V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  209 VKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312
The following BLAST results are available for this feature:
BLAST of CN189746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GI1L3_ARATH1.100e-1237.01Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH7.130e-1234.65Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH2.075e-1135.58Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189746 ID=CN189746; Name=CN189746; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTTTTTTTTGTTAGTTCCATTTATTGTAATAACTTGGAGCAC
AACTAAAACAATGTAAAAATCACACGCTTGCAATGTTACTTATTTTTGTA
TATTTTAATTGGGTTGTTAAGTTACGACAAATGTAACTTAAGAAAAACCC
CACCATTAATCGGATAATCAACTATTTATGGATTAAAAAATTGATAATTG
ATCAGTGCTTCCTCATAAACTCCGCTATTCCTTGAAAAAGACTACAAGTT
TGAGCAGCAGTGTTTGGGTCCATATCGACTGCAATCTTGTCGAGATAAAA
ACTGTGACCCATTCCAGGATTCACCAACAACTCCACATCCTTTCCAGCCT
TTTTCATGGCTTCATAATATTCCATCTCAGTGTCCTTAATCAAGTCATTA
CCCGCCACGCACAGCAGAAACGGAGGCAGCTTCAGACCGTCGATCGGCGA
CGCAGCCGGCCCCATTGGACAGGTGTACGGATGCCCCTTGTCGCTGTTCA
ACGGCAGGGCAAAGCTCAAGAACTTGTCCACCATGTCCAGAGTCAGAAGA
GGTGACTGCGGGTTTTCCAACTCCGACTTGCTCCTTTCCTGCCGGAGGAA
ACCCGGATGAATCGGAATCGCTCCGGCCACACGCAACGGGCTCAAGTCCG
CGTCACCTGCACGTGCCGCCACTTCAT
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