CN189740

Overview
NameCN189740
Unique NameCN189740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189740 vs. ExPASy Swiss-Prot
Match: PWD_ARATH (Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.061e-61
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = -3
Query:  189 EMLSPDLSFVLHTFSPTDHDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIHLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYVVQTRPQP 611
            EMLSPDLSFVLHT SP D D N VEAEIAPGLGETLASGTRGTPWRL+SGK DG+V+T AFANFSEE+LVSG GPADG  + LTVDYSKK LTVD +FR+QLGQRL SVGFFLER FGC QDVEGCLVG+D+Y+VQ+RPQP
Sbjct: 1055 EMLSPDLSFVLHTVSPADPDSNLVEAEIAPGLGETLASGTRGTPWRLASGKLDGIVQTLAFANFSEELLVSGTGPADGKYVRLTVDYSKKRLTVDSVFRQQLGQRLGSVGFFLERNFGCAQDVEGCLVGEDVYIVQSRPQP 1195          
BLAST of CN189740 vs. ExPASy Swiss-Prot
Match: PWD_ORYSJ (Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.319e-55
Identity = 102/141 (72.34%), Postives = 118/141 (83.69%), Query Frame = -3
Query:  189 EMLSPDLSFVLHTFSPTDHDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRTQAFANFSEEMLVSGAGPADGVVIHLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYVVQTRPQP 611
            E+L PDLSFVLHT  P DHD   V+AE+APGLGETLASGTRGTPWRLS  KFDG V T AF+NFSEEM+V  +GPA+G VI LTVDYSKKPL+VD  FR+Q GQRL ++G +LE+KFG  QDVEGCLVGKDI++VQ+RPQP
Sbjct: 1066 EILQPDLSFVLHTVCPADHDPKVVQAEVAPGLGETLASGTRGTPWRLSCNKFDGKVATLAFSNFSEEMVVHNSGPANGEVIRLTVDYSKKPLSVDTTFRKQFGQRLAAIGQYLEQKFGSAQDVEGCLVGKDIFIVQSRPQP 1206          
BLAST of CN189740 vs. ExPASy Swiss-Prot
Match: GWD2_ARATH (Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.962e-15
Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = -3
Query:  192 EMLSPDLSFVLHTFSPTDHDHNSVEAEIAPGLGETLASGTRGTPWRLSSGKFDGLVRT------QAFANFSEEMLV-------------SGAGPADGVVI----HLTVDYSKKPLTVDPIFRRQLGQRLCSVGFFLERKFGCPQDVEGCLVGKDIYVVQTRPQ 611
            E++  D +FV+HT +P   D + +  EI  GLGETL     G      + K +    T      +    +S+  ++             +GAG  D V++     + VDYS++PL +D  FR +L   +   G  +E  +GCPQD+EG + G  IY+VQ RPQ
Sbjct: 1115 EVICGDYAFVIHTNNPVSGDSSEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIFRSDSNNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAEAGNVIESIYGCPQDIEGVVKGGHIYIVQARPQ 1277          
The following BLAST results are available for this feature:
BLAST of CN189740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PWD_ARATH1.061e-6180.85Phosphoglucan, water dikinase, chloroplastic OS=Ar... [more]
PWD_ORYSJ4.319e-5572.34Phosphoglucan, water dikinase, chloroplastic OS=Or... [more]
GWD2_ARATH1.962e-1531.90Alpha-glucan water dikinase 2 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189740 ID=CN189740; Name=CN189740; organism=Citrus sinensis; type=EST; length=613bp
TAATAATAAATTGCATGCCGTACTTTTCTGCACAGCACAAAGGGTGCACA
AGCCAGGATGTCTTTTTACTAATTAATATCTGACAATCAAACAACTAACA
AGATCACTGACTCTTGGTTTGAGCGAAGCTGCTGCCCCTAGTAAAAAAAC
TAGAACAGAACAGTCTCGGAAGCGTGAATATTTTAGTGGGGTTGTGGACG
CGTTTGGACTACATAGATATCCTTGCCAACCAGGCATCCTTCTACGTCCT
GTGGGCAGCCAAACTTCCTCTCAAGAAAGAAACCAACAGAACAGAGGCGC
TGACCGAGCTGACGACGGAAAATTGGATCAACTGTTAAGGGTTTCTTGCT
ATAATCTACAGTCAAGTGAATCACTACCCCATCAGCAGGACCTGCACCAG
ATACGAGCATCTCTTCACTGAAATTGGCAAACGCCTGTGTCCTCACCAGC
CCATCAAACTTCCCAGAAGACAGACGCCACGGTGTGCCTCTGGTACCAGA
AGCTAGAGTTTCACCAAGTCCAGGGGCAATTTCAGCCTCTACAGAGTTAT
GGTCATGATCTGTTGGGCTGAAGGTATGAAGCACAAATGAGAGATCTGGG
GAAAGCATTTCTT
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