CN189739

Overview
NameCN189739
Unique NameCN189739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_CHICK (WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45L PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 72/192 (37.50%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  124 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            +   NQDHGCFA G E GFRVY +DP K   +++F   P GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A PG   G V++ D     K    I AH   ++ IA+ L G  +ATA
Sbjct:   15 YAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEF---PEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCIALNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_XENLA (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 71/188 (37.77%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  136 NQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ IA+ L G  +ATA
Sbjct:   19 NQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVSYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIALNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_XENTR (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 71/192 (36.98%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  124 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ IA+ L G  +ATA
Sbjct:   15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIALNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_PONAB (WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45L PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 71/192 (36.98%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  124 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ IA+ L G  +ATA
Sbjct:   15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_MOUSE (WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 71/192 (36.98%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  124 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ IA+ L G  +ATA
Sbjct:   15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_HUMAN (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 71/192 (36.98%), Postives = 99/192 (51.56%), Query Frame = 1
Query:  124 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            +   NQDHGCFA G E GFRVY +DP K   +++F     GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A PG   G V++ D  +  K    I AH   ++ IA+ L G  +ATA
Sbjct:   15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEF---LEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: WIPI3_DANRE (WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45l PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  124 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 681
            +   NQDHGCFA G E GFRVY +DP K   + +F     GG   V MLFR N + LV  G    +  NKVMIWDD + + + E+ F +EVK             +  + V+ FT +   +   ET  NP GLC +  N+   ++A P    G V++ D     K    I AH   +  I + L G  +ATA
Sbjct:   15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEF---LEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCITLNLQGTRIATA 203          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: HSV2_PICAN (SVP1-like protein 2 OS=Pichia angusta GN=HSV2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 66/193 (34.20%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  130 ALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS---NKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNF-TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-----KYITAHASRIASIAMTLDGRFVATA 681
            A NQD  CFA   E+GF+VY +DP +  M+R F  N  GG  L++ML R+N + LV  G       NK+ IWDD + +    L F S + N              KV ++ F +  KL+ Q ET  N  G+ ++S N     +A PG   GQ+++ D             I AH SRI  +A++  G  +A+A
Sbjct:   21 AFNQDQTCFAVCHESGFQVYNTDPMELRMKRTFSTN--GGVGLIAMLHRTNYVALVGGGRQPRFPVNKLCIWDDLKKKPSIMLEFMSPILNVLLSRILIVVVLKNKVLIHAFESKPKLLAQHETYDNEAGVAELSVNEQTSFLAFPGRAIGQIQLVDVSPAHRDRNLISIIKAHKSRIQCLAISNSGLLIASA 211          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: HSV2_SCHPO (SVP1-like protein 2 OS=Schizosaccharomyces pombe GN=hsv2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.363e-17
Identity = 57/197 (28.93%), Postives = 101/197 (51.27%), Query Frame = 1
Query:  115 TIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG---PHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNF-TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV----EDYGTKKSKYITAHASRIASIAMTLDGRFVATA 681
            TI+ ++LNQD  C +   +TG++++  +P K   +R F+    GG  +V MLFRSN++ LV  G    +  NK+++WDD + R + EL    E+K               K+++Y F  +LKL   ++T  NP GLC +        +  P    GQ+++    +D+    +  + AH S I+ + ++  G  +A++
Sbjct:    3 TINTVSLNQDASCMSVALDTGYKIFQINPLKLRAQRQFND---GGLSIVKMLFRSNVLLLVGGGGNPKYAPNKLIVWDDVKERPVKELELNFEIKGICFDGKLLAIATASKLFLYQFGNNLKLQRCLDT-QNPKGLCAMVTTVEKTAIVFPSRKVGQLQILFLFKDH--MNTSIVPAHDSEISCLGISKTGSKIASS 193          
BLAST of CN189739 vs. ExPASy Swiss-Prot
Match: HSV2_DEBHA (SVP1-like protein 2 OS=Debaryomyces hansenii GN=HSV2 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 70/232 (30.17%), Postives = 104/232 (44.83%), Query Frame = 1
Query:  100 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRG-GTQLVSMLFRSNIICLVNSGPH---QSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMV----------------------------MACPGLLKGQVRVEDY---GTKKS--KYITAHASRIASIAMTLDGRFVATA 681
            Q   + I ++  NQD GCFA G E GF VY ++P    ++R+F+ N  G G   ++ML R+N + LV  G +    +NK++IWDD + +    L F S V N              +V VY F+   K     ET+ N  GL D+S N    +                            +A PG   GQ+++ D    G +K+    I AH S+I  +A+   G  VA+A
Sbjct:   12 QSKELQILNINFNQDQGCFAVGHEYGFLVYNTNPIDIRVKRNFNINGHGSGIAHITMLHRTNYLALVGGGKNPKFANNKLVIWDDLKRKNSLNLEFMSPVLNVLLSRIRIIVVLKNQVLVYGFSSPPKKFATYETIENEFGLADLSVNFTNSIGNNLSTSNSSISSLVSNQVSYDSNKYQTLAFPGRSIGQIQIVDVSPSGQEKNLVSIIKAHKSKIRCLALNRSGTLVASA 243          
The following BLAST results are available for this feature:
BLAST of CN189739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
WIPI3_CHICK1.153e-2537.50WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENLA5.724e-2537.77WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENTR7.476e-2536.98WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_PONAB2.175e-2436.98WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_MOUSE2.175e-2436.98WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_HUMAN2.175e-2436.98WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_DANRE3.141e-2335.94WD repeat domain phosphoinositide-interacting prot... [more]
HSV2_PICAN2.107e-1934.20SVP1-like protein 2 OS=Pichia angusta GN=HSV2 PE=3... [more]
HSV2_SCHPO3.363e-1728.93SVP1-like protein 2 OS=Schizosaccharomyces pombe G... [more]
HSV2_DEBHA1.669e-1630.17SVP1-like protein 2 OS=Debaryomyces hansenii GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189739 ID=CN189739; Name=CN189739; organism=Citrus sinensis; type=EST; length=683bp
GAGGCCTCGTACAGATTATTGATCCTCTAGGCTCTCTCTAAAACCCTTTG
CTGATGCCCTCACTCTCATCCTGACCCGACCCGAAAAGACATGATGAACC
AACCCGACCCGATAACCATCCACCACCTCGCGCTCAACCAAGACCACGGC
TGCTTCGCCACGGGCACGGAAACGGGCTTCCGGGTCTACTTATCCGACCC
GTACAAACCCATCATGCGCCGGGACTTCGACCGGAACCCACGTGGCGGGA
CCCAACTGGTGTCCATGCTCTTCCGGTCAAACATCATCTGCCTGGTCAAC
TCCGGGCCCCACCAGAGCAACAAGGTGATGATATGGGACGACCACGAGAA
CCGCTACCTCGGCGAGCTGTCGTTCCGGTCGGAGGTCAAGAACGTCAGGC
TCCGGCGCGACCGGATCGTCGTCGTTTTGAACCAGAAGGTCTACGTGTAC
AACTTCACCGACTTGAAGCTGGTCGATCAGATTGAGACAGTAGTGAATCC
CACGGGGCTGTGCGACGTGTCGCAGAACGCGGGGCCCATGGTGATGGCGT
GTCCGGGGTTGCTTAAGGGTCAAGTTAGGGTTGAGGATTATGGGACCAAG
AAATCAAAGTACATAACGGCCCATGCCTCGAGAATTGCGAGTATCGCTAT
GACTTTGGATGGTAGATTCGTGGCTACTGCCAG
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