DR908855

Overview
NameDR908855
Unique NameDR908855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 4.414e-88
Identity = 154/190 (81.05%), Postives = 168/190 (88.42%), Query Frame = 2
Query:    2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571
            L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA IA EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P  HLAREFM
Sbjct:  745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88
Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2
Query:    2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571
            L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P  HLAREFM
Sbjct:  745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88
Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2
Query:    2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571
            L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P  HLAREFM
Sbjct:  744 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 933          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88
Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2
Query:    2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571
            L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P  HLAREFM
Sbjct:  745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88
Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2
Query:    2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571
            L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P  HLAREFM
Sbjct:  745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.427e-70
Identity = 124/190 (65.26%), Postives = 152/190 (80.00%), Query Frame = 2
Query:    2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571
            L DDTL T+VDK++LN+VK+ I QGFQWG REGPLCDE IRNV F+++D  +APE ++RG GQIIPTARRV YS+FL A+PRLMEPVY VE+  P D +  IY +L+RRRGHV  D+P+PG+P Y+V+A +PVI+S GFETDLR HTQGQA    VFDHW +VPGDPLDKSI  +PLEPA    LAR+F+
Sbjct:  758 LRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFL 947          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   23 TEVDKSL--LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 514
            T++ K +  LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  663 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   23 TEVDKSL--LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 514
            T++ K +  LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  663 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48
Identity = 89/158 (56.33%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   44 LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP-GDPLDKS 514
            LN +KDS+V GFQW  REGP+ +EP+R+++F I+D  +  + +HRG GQIIPTARRV Y+A L+A P L+EPV+ VEIQ P   +  +Y VL+RRRGHV  +  +PGTP + +KA+LPV+ESFGF  DLR  T GQAF  SVFDHW  +P G PLD +
Sbjct:  657 LNEIKDSVVSGFQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKAYLPVMESFGFNGDLRAATSGQAFPQSVFDHWERLPGGSPLDST 814          
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   23 TEVDKSL--LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 514
            T++ K +  LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  663 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
The following BLAST results are available for this feature:
BLAST of DR908855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
U5S1_CHICK4.414e-8881.05116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB5.765e-8880.53116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE5.765e-8880.53116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN5.765e-8880.53116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN5.765e-8880.53116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO1.427e-7065.26114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_RAT2.005e-4855.42Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]
EF2_PONAB2.005e-4855.42Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 S... [more]
EF2_NEUCR2.005e-4856.33Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_MOUSE2.005e-4855.42Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16983 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908855 ID=DR908855; Name=DR908855; organism=Citrus sinensis; type=EST; length=571bp
TTTATTAGATGACACACTCCCAACGGAAGTTGACAAGAGCTTGCTGAATG
CTGTTAAGGATTCCATTGTTCAAGGCTTTCAGTGGGGTGCTCGAGAAGGA
CCCCTCTGTGATGAACCTATCAGAAATGTCAAGTTTAAAATAGTCGATGC
AAGGATTGCACCTGAACCGCTGCATCGAGGATCTGGTCAGATCATTCCCA
CAGCTCGACGTGTGGCTTATTCAGCTTTTCTTATGGCTACCCCTCGGCTT
ATGGAACCGGTGTATTATGTTGAGATACAAACTCCAATTGATTGTGTCTC
TGCAATCTACACGGTGTTATCTAGAAGGCGTGGACATGTTACTGCCGATG
TTCCTCAACCAGGAACTCCAGCTTATATTGTTAAGGCATTTCTACCAGTG
ATTGAGAGTTTTGGTTTTGAGACGGACTTGAGGTACCATACTCAAGGGCA
AGCATTTTCCCTTTCAGTCTTTGATCATTGGGCTATAGTTCCTGGAGATC
CCCTTGACAAGAGCATAGTTCTGCGGCCGCTTGAACCTGCACCAATCCAG
CACCTTGCTCGTGAATTTATG
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