DR908855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 4.414e-88 Identity = 154/190 (81.05%), Postives = 168/190 (88.42%), Query Frame = 2 Query: 2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571 L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA IA EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P HLAREFM Sbjct: 745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88 Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2 Query: 2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571 L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P HLAREFM Sbjct: 745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88 Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2 Query: 2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571 L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P HLAREFM Sbjct: 744 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 933
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88 Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2 Query: 2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571 L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P HLAREFM Sbjct: 745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88 Identity = 153/190 (80.53%), Postives = 168/190 (88.42%), Query Frame = 2 Query: 2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571 L+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV+RPLEP P HLAREFM Sbjct: 745 LVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFM 934
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 265.388 bits (677), Expect = 1.427e-70 Identity = 124/190 (65.26%), Postives = 152/190 (80.00%), Query Frame = 2 Query: 2 LLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFM 571 L DDTL T+VDK++LN+VK+ I QGFQWG REGPLCDE IRNV F+++D +APE ++RG GQIIPTARRV YS+FL A+PRLMEPVY VE+ P D + IY +L+RRRGHV D+P+PG+P Y+V+A +PVI+S GFETDLR HTQGQA VFDHW +VPGDPLDKSI +PLEPA LAR+F+ Sbjct: 758 LRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFL 947
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4) HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48 Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2 Query: 23 TEVDKSL--LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 514 T++ K + LN +KDS+V GFQW +EG LC+E +R V+F + D + + +HRG GQIIPTARR Y++ L A PRLMEP+Y VEIQ P V IY VL+R+RGHV + GTP ++VKA+LPV ESFGF DLR +T GQAF VFDHW I+PGDP D S Sbjct: 663 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48 Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2 Query: 23 TEVDKSL--LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 514 T++ K + LN +KDS+V GFQW +EG LC+E +R V+F + D + + +HRG GQIIPTARR Y++ L A PRLMEP+Y VEIQ P V IY VL+R+RGHV + GTP ++VKA+LPV ESFGF DLR +T GQAF VFDHW I+PGDP D S Sbjct: 663 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48 Identity = 89/158 (56.33%), Postives = 116/158 (73.42%), Query Frame = 2 Query: 44 LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVP-GDPLDKS 514 LN +KDS+V GFQW REGP+ +EP+R+++F I+D + + +HRG GQIIPTARRV Y+A L+A P L+EPV+ VEIQ P + +Y VL+RRRGHV + +PGTP + +KA+LPV+ESFGF DLR T GQAF SVFDHW +P G PLD + Sbjct: 657 LNEIKDSVVSGFQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKAYLPVMESFGFNGDLRAATSGQAFPQSVFDHWERLPGGSPLDST 814
BLAST of DR908855 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48 Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 2 Query: 23 TEVDKSL--LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 514 T++ K + LN +KDS+V GFQW +EG LC+E +R V+F + D + + +HRG GQIIPTARR Y++ L A PRLMEP+Y VEIQ P V IY VL+R+RGHV + GTP ++VKA+LPV ESFGF DLR +T GQAF VFDHW I+PGDP D S Sbjct: 663 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828 The following BLAST results are available for this feature:
BLAST of DR908855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908855 ID=DR908855; Name=DR908855; organism=Citrus sinensis; type=EST; length=571bpback to top |