DR908853

Overview
NameDR908853
Unique NameDR908853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.158e-56
Identity = 107/124 (86.29%), Postives = 118/124 (95.16%), Query Frame = 3
Query:  198 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +K+ATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSA
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSA 124          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.512e-56
Identity = 108/134 (80.60%), Postives = 119/134 (88.81%), Query Frame = 3
Query:  168 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAK+AT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSA
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSA 134          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.183e-55
Identity = 105/134 (78.36%), Postives = 118/134 (88.06%), Query Frame = 3
Query:  168 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +K+AT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSA
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSA 134          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 88/117 (75.21%), Postives = 104/117 (88.89%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG A
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRA 131          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 88/117 (75.21%), Postives = 104/117 (88.89%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG A
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRA 131          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 88/117 (75.21%), Postives = 104/117 (88.89%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG A
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRA 131          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.086e-46
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = 3
Query:  222 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            VKLFNRW++EDV++ DISL+DYI +   ++  Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSA
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQI---RSPVYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSA 140          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.048e-45
Identity = 86/117 (73.50%), Postives = 102/117 (87.18%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            D+KLF +W+ +DVQ+NDISL DYI V+  K A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG A
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRA 131          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.124e-43
Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = 3
Query:  168 MATAVVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG A
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRA 155          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.270e-43
Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSA 569
            D+KLF +W  E + ++DISL+DYI V+   +A Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG A
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRA 137          
The following BLAST results are available for this feature:
BLAST of DR908853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR1.158e-5686.2940S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH1.512e-5680.6040S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH2.183e-5578.3640S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_MOUSE8.316e-4775.2140S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN8.316e-4775.2140S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN8.316e-4775.2140S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_NEUCR1.086e-4674.1440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5_RAT2.048e-4573.5040S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5A_DROME1.124e-4366.4240S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA3.270e-4369.2340S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16981 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908853 ID=DR908853; Name=DR908853; organism=Citrus sinensis; type=EST; length=571bp
GAACTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCTT
CAGACAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCGC
TGATCATCTTGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATATT
TTGTTGTGTTGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGAC
CCATCACAGCCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCGA
GGATGTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAAG
CAGCAAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGTG
AAGCGGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACTC
ACTGATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGGA
TTGTCAAGCACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCCA
ATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACGC
TACCCGCATTGGATCTGCTGG
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