DR908852

Overview
NameDR908852
Unique NameDR908852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908852 vs. ExPASy Swiss-Prot
Match: TIF5A_ARATH (Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 3 
Query:  111 PXXXXXXLTIFYNGQVCIC-DVTEFQAKAILLLASREMEPASPAN---PESQLYS------PNSGLSMKRSLQRFLQKRKHRSLATSPY 347
            P      +TIFYNG++C   DVT  QA++I+ +ASREM+  S +N   P ++  S      PN   SMK+SLQ FLQKRK R  ATSPY
Sbjct:   39 PNEESQRITIFYNGKMCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQATSPY 127
The following BLAST results are available for this feature:
BLAST of DR908852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF5A_ARATH1.134e-1148.31Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16980 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-05_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908852 ID=DR908852; Name=DR908852; organism=Citrus sinensis; type=EST; length=571bp
CAATTTAGAGCTTCGCCTTCTTCCTTATTCTGACTCTCTTTCTTCTGAAG
ATTTCAGCCTCGCCGCCGGCTACGGTCACAACTTGACTATGGGAGAGTCA
AGCCGTGAGCCCGCAAAATCAACAGCAGCAGTTAACAATCTTCTACAACG
GACAAGTTTGCATTTGTGATGTCACGGAATTTCAGGCTAAAGCGATCTTA
TTGCTTGCAAGTAGAGAAATGGAACCGGCATCACCGGCGAATCCTGAATC
TCAATTATACAGCCCCAATTCGGGTCTTTCAATGAAGAGATCATTGCAAC
GTTTCCTCCAAAAAAGAAAGCACAGGAGCTTAGCCACATCCCCTTATTAA
AAGCATTCCATCGAATTATTAACTCAATATATGTATCTGCGGGTTCTTTT
GTAACAAATAACGATCGTCAGATGGGGAATGTATATTGATTTGAGACAAG
AAGTGGAGATCGATTTATATTTCTCCTGGGGTACCCTATTGATTTGATGG
ATTCATCACTACTTGTGGGGTATAAATAGGGGTACCCATTGGAATTTAAT
CATCATTACAGAATACAGATT
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