CN189726

Overview
NameCN189726
Unique NameCN189726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.047e-36
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 3
Query:   45 SLGSVKGISKTFGLKCSPNFQASMXXXXXXXXXXXXE--EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            S+GS K +S++FGLKCS N   +             +  E EFE  +DQYILDAAEEAGVDLPYSCRAGACSTCAG++ SG+VD SDGSFL+D+ +E G +LTC++YP SDCVI +HKE EL
Sbjct:   33 SVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.865e-34
Identity = 73/122 (59.84%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   42 TSLGSVKGISKTFGLKCSPNFQAS-MXXXXXXXXXXXXEEHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +SL     ++K   LK S     S M            EEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ESGSVD SDGSFLDD Q E G +LTC+SYP SDCVI +HKE +L
Sbjct:   30 SSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.669e-32
Identity = 63/79 (79.75%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  168 EAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL SG+VD SD SFLDD+Q+EAG +LTC++YPTSDCVI++HKEEEL
Sbjct:   20 EVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.730e-31
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 3
Query:  153 EEHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+E G VD SDGSFL+D+  E G +LTC++YP SD VI +HKEEEL
Sbjct:   14 QENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.260e-31
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            E+  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVD SD SFLDD+Q+EAG +LTC++YPTSDC I++HKEE+L
Sbjct:   14 ENSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.951e-31
Identity = 60/79 (75.95%), Postives = 72/79 (91.14%), Query Frame = 3
Query:  168 EAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK++SG+VD SD SFLDD+Q+EAG +LTC++YPTSDC I++HKEEEL
Sbjct:   20 EVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            E   E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVD SD SFLDD+Q+EAG +LTC++YPTSDC I++HKEE+L
Sbjct:   14 ESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.034e-31
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKL SG+VD SD SFLDD+Q+EAG +LTC++YPTSD VIQ+HKEE+L
Sbjct:   16 KHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.034e-31
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKL SG+VD SD SFLDD+Q+EAG +LTC++YPTSD VIQ+HKEE+L
Sbjct:   16 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.034e-31
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKL SG+VD SD SFLDD+Q+EAG +LTC++YPTSD VIQ+HKEE+L
Sbjct:   16 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CN189726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH3.047e-3659.84Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE4.865e-3459.84Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER_MASLA2.669e-3279.75Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_RAPSA1.730e-3172.62Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_SYNY42.260e-3172.29Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_CHLFR2.951e-3175.95Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_SYNY33.855e-3172.29Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_NOSMU5.034e-3173.49Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANASP5.034e-3173.49Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO5.034e-3173.49Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189726 ID=CN189726; Name=CN189726; organism=Citrus sinensis; type=EST; length=408bp
ACCCAGACATCAACTATCAAGGAACTTAATCAAGAGGCCTAACCTCACTT
GGATCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAA
TTTCCAAGCATCAATGGGTGGGTAGAAGATTAAGCTGATTGGACCTAAGG
GTGAAGAGCATGAGTTTGAGGCCCATGAAGACCAGTACATCCTCGATGCA
GCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTG
CTCGACGTGTGCTGGGAAGTTGGAGTCTGGTTCAGTTGACCACTCAGATG
GTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTAGCTGCTGACTTGC
ATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGA
GCTTTGCT
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