DR908850

Overview
NameDR908850
Unique NameDR908850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 3.662e-42
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYK+EDEEHKKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKKIED+I+QAIQWL+ NQLAEADEFEDKMKELESICNPIIAKMYQ
Sbjct:  527 EAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQ 618          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.065e-41
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYK+EDEEHKKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKK+ED+I++AIQWLD NQL EADEFEDKMKELES+CNPIIAKMYQ
Sbjct:  527 EAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQ 618          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.391e-41
Identity = 88/122 (72.13%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXXXXXXXXKIEEVD 368
            EAEKYKAEDEE KKKVEAKN+LENYAYNMRNTVKDEKIGSKL   DKKKIEDA+DQAI WL+SNQLAE DEFEDKMKELE ICNPIIAKMYQ                        KIEEVD
Sbjct:  529 EAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAGVPMDDDAPPSGGSSAGPKIEEVD 650          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.373e-41
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYK+EDEEHKKKVE+KNALENYAYNMRN VKDEKIG+KL  ADKKKIE+AID +IQWLD NQLAEADEF+DKMKELESICNPIIAKMYQ
Sbjct:  527 EAEKYKSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQ 618          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.905e-41
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYK+EDEEHKKKVEAKNALENYAYNMRNT+KDEKI SKL   D+ KIEDAI+QAIQWLD NQLAEA+EFEDKMKELES+CNPIIAKMYQ
Sbjct:  527 EAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQ 618          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.178e-40
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYK+EDEE KKKVEAKNALENYAYNMRNT+KD+KI S+L  ADKK+IEDAID+AI+WLD+NQLAEADEFEDKMKELESICNPIIAKMYQ
Sbjct:  527 EAEKYKSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQ 618          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.302e-39
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYK+EDEEHKKKV+AKNALENYAYNMRNT++DEKIG KL   DKKKIED+I+ AI+WL++NQLAE DEFEDKMKELESICNPIIAKMYQ
Sbjct:  527 EAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQ 618          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.881e-38
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 275
            EAEKYKAEDEE KKKV+AKNALENYAYNMRNT+KD+KI SKL   DKKKIEDA+D AI WLDSNQLAE +EFEDKMKELE ICNPIIAKMY
Sbjct:  523 EAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMY 613          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            +AE+YKAEDEE KKKVEAKN+LENYAYNMRNT+KDEKIG KL P +K+KIE A++ AIQWL+ NQ+AE DEFEDK KELE ICNPIIAKMYQ
Sbjct:  526 DAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQ 617          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.121e-36
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYKAEDEE KKKVEAKNALENYAYNMRNT+KD+KI  KLD  DK+KIE A+++AI+WL+ NQLAE DE EDK+KELE +CNPIIA++YQ
Sbjct:  529 EAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQ 620          
The following BLAST results are available for this feature:
BLAST of DR908850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
HSP71_ARATH3.662e-4289.13Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP72_ARATH1.065e-4185.87Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP71_SOLLC1.391e-4172.13Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP7E_SPIOL2.373e-4188.04Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP72_SOLLC6.905e-4186.96Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7C_PETHY1.178e-4086.96Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP73_ARATH1.302e-3983.70Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_MAIZE1.881e-3884.62Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_SOYBN3.547e-3778.26Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA5.121e-3676.09Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16978 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-38_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908850 ID=DR908850; Name=DR908850; organism=Citrus sinensis; type=EST; length=572bp
AAGAGGCCGAGAAGTACAAGGCTGAAGACGAGGAGCACAAGAAGAAGGTC
GAGGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGT
CAAGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGA
TTGAGGATGCCATTGATCAGGCAATTCAATGGCTTGATAGCAACCAGCTG
GCTGAGGCCGATGAATTTGAAGACAAGATGAAGGAGCTTGAGAGCATCTG
CAATCCCATCATTGCCAAGATGTATCAAGGTGCTGGTGGTGATATGGGCG
GTGGCATGGATGATGATGCTCCTCCAGCTGGTGGCAGTGCCGCCGGTCCC
AAGATTGAGGAAGTTGACTAAGCTTCCAGTTTTATTTTGTTGTGTTTGTG
GGAGGTCGGTTTTTTGACGGTGGGAAAACTGGACGTTTGGTTTTTATCTT
ATGTTGTTTTAGCCTTAGGATGAATATTAATTTTTCCTTTTCTTTTTATT
TTTCAAATTTTACTTTTAATTCGGACCAATTTATATAATGAATATTTTTT
CGGTCCCTAAAAAAAAAAAAAA
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