CN189720

Overview
NameCN189720
Unique NameCN189720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189720 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 3.787e-36
Identity = 76/127 (59.84%), Postives = 100/127 (78.74%), Query Frame = -3 
Query:  363 MSYRREHLASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGXXXXXXXXXXXLIRVL 743
            M++RRE+ AS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TGDIHEEVE+HNRLLD++GN MD++RGIMSGT++RFK+VFEKKSNR+ C L+            LIR+L
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLL 125
[Close]
BLAST of CN189720 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.919e-33
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = -3 
Query:  414 MSYRREHLASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 743
            M+ RRE    + +LFD   G+EEGG++A+SSYS  I+EH+N++A++GL++R + LKRL+GDI+EEV++HNR+LDRMGN MD+SRG +SGTMDRFK VFE KS+RR+ TLV
Sbjct:    1 MNPRREPRGGRSSLFD---GIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLV 107
The following BLAST results are available for this feature:
BLAST of CN189720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET12_ARATH3.787e-3659.84Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
BET11_ARATH3.919e-3360.91Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189720 ID=CN189720; Name=CN189720; organism=Citrus sinensis; type=EST; length=748bp
TTTTTTTTTTTTTTTTTGACATAAAATTTCTATAATTTTTTTTTCAAAAA
TAAAAAAATATAATCAATGAATGTGAGAGGCATATACTCCTAAACGTCCC
TAGATAGCTCTGTCTATTAACATTCCCATGTAATGAAAGTATGACGGCCG
CCCTCTTTCATGGACAATTCAGTTTAGCATATTCATAAACCAATTTTCTC
CATAAAGCCCCGAGCTTTTTTTTAATCGTATTTTCAAAAAGATAAGGAAA
AAAGGATTTAGCGATGAAGATTACAAGCTGCACAATTGTACGTGAACCAA
TTCCCATACCCAAATTGCAGACTTGCACAGGCAAGATTTAATGTTCTACT
TCAACCACGCATGAGGACCCTAATGAGATAGTAGAGAACGAAGAAGGAAA
CCACAAAAGATCCCACTAGAGTACATATTCTCCGGTTAGATTTCTTCTCG
AACACCATCTTAAAGCGATCCATGGTTCCTGACATGATACCCCTTGATGC
ATCCATACTGTTGCCCATTCGATCAAGCAAACGATTATGACTTTCTACCT
CCTCGTGTATGTCGCCTGTTAATCTCTTCAGAAAAACTGCTCTTTCTTTC
AGACCGTCGATTGCTTTATCATTGTCATGCTCATCGATTCCACTGGAATA
TGAGGATGAGGCCTTAAGACCACCTTCCTCAAGGCCGTCATACTCATCAA
AGAGAGCCCCTTTAGAAGCAAGGTGCTCCCTTCTGTAACTCATGATTT
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