CN189718

Overview
NameCN189718
Unique NameCN189718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189718 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -2 
Query:  546 CVFDHWDMMSSDPLEHGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 686
            CVFDHW+MM SDPLE G+QA+ LV+ IRKRKGLKEQMTPLSEFEDKL
Sbjct:  797 CVFDHWEMMPSDPLEAGSQASTLVSVIRKRKGLKEQMTPLSEFEDKL 843
[Close]
BLAST of CN189718 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:  546 CVFDHWDMMSSDPLEHGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 686
            CVFDHW+ M SDP + G+QA  LV DIRKRKGLK +   LSE+EDKL
Sbjct:  799 CVFDHWEAMGSDPTQVGSQANTLVMDIRKRKGLKPEPAALSEYEDKL 845
The following BLAST results are available for this feature:
BLAST of CN189718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EF2_BETVU8.357e-1682.98Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE6.198e-1165.96Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002F02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189718 ID=CN189718; Name=CN189718; organism=Citrus sinensis; type=EST; length=687bp
TTTTTTTCATACTCTCNACCATTAGGGTTCCAAAAGAATCGAACCAATAT
TTTGTATATCCATTCCTCTCAATACAATATATCAAGGAACAAAAATAATC
CACCACATCAGATCACAAAGAGACACATCCACAGAAAACATTATAGACAC
CTAAATAGCTAACAACACAACACTGAACAAGAAAAATATCATAATAATAA
TAATAATATATCAACCAACGTCGGCCAGAATTAGTTTAAACACATGACAG
AACATCAAACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGAC
AGAGACAGGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACA
CAATGAGGATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAA
TATTGCTGCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTC
GTCCTCTACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGC
AACAAGCTGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCT
TGTCCTCAAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCTC
TTCCTGATATCAGCAACAAGCTGTGCAGCCTGTGTACCATGCTCCAGTGG
ATCGGATGACATCATGTCCCAGTGATCAAACACACAT
back to top