DR908846

Overview
NameDR908846
Unique NameDR908846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908846 vs. ExPASy Swiss-Prot
Match: TXD17_DANRE (Thioredoxin domain-containing protein 17 OS=Danio rerio GN=txndc17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:   67 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 306
            K K  F  F  DKD     SWCPDCV+AEPV+   L   P+    +   VGDRP W++  + F+     KLTGVPTL R+
Sbjct:   23 KGKEIFAYFSGDKDEHGK-SWCPDCVKAEPVVRAELPHLPEGTVFIYCQVGDRPYWKDSNNDFK--KTLKLTGVPTLLRY 99
[Close]
BLAST of DR908846 vs. ExPASy Swiss-Prot
Match: TXD17_MOUSE (Thioredoxin domain-containing protein 17 OS=Mus musculus GN=Txndc17 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:   10 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 306
            + +V  F+  FDK   E  + K  F  F   KD +   SWCPDCV AEPVI + L+   +D   +   VGD+P W++P + FR   + K+T VPTL ++
Sbjct:    6 EVSVLGFEE-FDKAVKEH-EGKTIFAYFSGSKD-TEGKSWCPDCVEAEPVIREGLKHVTEDCVFIYCQVGDKPYWKDPNNDFR--QKLKITAVPTLLKY 99
The following BLAST results are available for this feature:
BLAST of DR908846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TXD17_DANRE5.157e-1245.00Thioredoxin domain-containing protein 17 OS=Danio ... [more]
TXD17_MOUSE6.735e-1239.39Thioredoxin domain-containing protein 17 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16974 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908846 ID=DR908846; Name=DR908846; organism=Citrus sinensis; type=EST; length=572bp
AACTTGTCGGACGCAACAGTCTCAAGCTTCGACAATGTCTTTGACAAGTT
TAAATCGGAGGCGCCCAAAAATAAAGCCAATTTCATTCTTTTTCTCGCGG
ACAAAGATCCCTCTACTTCTCTCAGCTGGTGCCCTGATTGCGTGAGAGCT
GAACCTGTAATCTACAAAACCCTGGAAGCTTCACCAGATGACATCGCACT
GCTGCAGGCTTATGTTGGGGATAGACCAACATGGAGGAATCCTCAGCACC
CATTCAGGGTTAATTCAAGGTTCAAACTGACGGGAGTTCCGACACTCTTC
CGCTGGGAAAATGACATAGTCAGCGGCCGTCTTGAAGACCATGAAGCCCA
TCTCGAGCACAAAATCAAAGCCCTTCTTTCTGCCGATTAAGTTCTGATGG
TTTCCCATTTGTAGGATGCACAAGAATCCTATATGGGTGGTTTCAATCTA
TCTTGGCATTTTTGCTGGTTTTATATGCATGTTACTAATGCTGGCTAGCG
ACGTTGCCCTTCAGTGGCCAATGAAATAAAGTGTCTACTGATGACATTGC
ATTTTACAAAAAAAAAAAAAAA
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