CN189712

Overview
NameCN189712
Unique NameCN189712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GRS15_ARATH (Monothiol glutaredoxin-S15 OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 84/104 (80.77%), Postives = 96/104 (92.31%), Query Frame = -1
Query:  375 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASN 686
            SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVRVL  YNVPIS+RNILED ELK+AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ N
Sbjct:   64 SLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELKNAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGN 167          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GRXS4_ORYSJ (Monothiol glutaredoxin-S4 OS=Oryza sativa subsp. japonica GN=GRXS4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 70/106 (66.04%), Postives = 90/106 (84.91%), Query Frame = -1
Query:  381 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 698
            +S +S  ++V QD+KENPV++YMKG P+ P+CGFS+LAVRVL  Y+VPISAR+IL D +LK +VKA ++WPTFPQIFIKGEF+GGSDIIL+MHQ G+LK+ L  IA
Sbjct:   71 SSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIA 176          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GRXS1_ORYSJ (Montothiol glutaredoxin-S1, mitochondrial OS=Oryza sativa subsp. japonica GN=GRXS1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = -1
Query:  381 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 698
            +S +S  ++V QD+KENPV++YMKG PE P CGFS+LAV+VL  Y+VPISAR+IL D +LK  VKA ++WPTFPQIFIKGEF+GGSDIIL+MHQ G+LK+ L  IA
Sbjct:   71 SSNMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKLKECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIA 176          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GLRX5_SACKL (Monothiol glutaredoxin-5, mitochondrial OS=Saccharomyces kluyveri GN=GRX5 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = -1
Query:  390 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 680
            K+ +E  ++  PV+L+MKG PEFPQCGFS   + +LG   V     +A N+LED EL+  VK FS WPT PQ+++  EF+GG DI++NM Q+GEL + L+
Sbjct:   33 KQAIESAIESAPVVLFMKGTPEFPQCGFSKATINMLGQQGVDPMKFAAYNVLEDAELREGVKEFSEWPTIPQLYVNKEFVGGCDIVMNMAQTGELAKLLE 132          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GLRX5_HUMAN (Glutaredoxin-related protein 5 OS=Homo sapiens GN=GLRX5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  390 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 698
            A G    E ++  VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK
Sbjct:   36 AGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 139          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GLRX5_DICDI (Monothiol glutaredoxin-5 OS=Dictyostelium discoideum GN=grx5 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 47/95 (49.47%), Postives = 72/95 (75.79%), Query Frame = -1
Query:  393 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 677
            E VE  V E+P +LYMKG+PE P+CGFS+ AVR+L A     ++ N+L++ +++ AVK F  WPT PQ+++KG+FIGG+DI++ +++SGEL + L
Sbjct:   39 EDVETQVAESPCILYMKGIPERPECGFSNTAVRILQAEGAVFTSYNVLKNNDMREAVKEFGDWPTIPQLYVKGQFIGGADILMGLYKSGELSKLL 133          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GLRX5_MOUSE (Glutaredoxin-related protein 5 OS=Mus musculus GN=Glrx5 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = -1
Query:  390 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 698
            AS     E ++  VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK
Sbjct:   32 ASSGGQAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 135          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GLRX4_SCHPO (Monothiol glutaredoxin-4 OS=Schizosaccharomyces pombe GN=grx4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = -1
Query:  384 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 680
            ++ +EQ VKE+P++L+MKG P  P CGFS  A+++L   NV    +   N+L + EL+  +K FS WPT PQ++I GEF+GGSDI+ +MH+SGEL + LK I
Sbjct:   26 RQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKILKEI 127          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GLRX4_HAEDU (Glutaredoxin-4 OS=Haemophilus ducreyi GN=grxD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = -1
Query:  378 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIAS 671
            ++Q + ENP++LYMKG P+FP CGFS+ AV  +    VP    +IL +P+++S +  F++WPTFPQ++++GE IGG DIIL M Q GEL   LK  A+
Sbjct:    7 IKQQINENPILLYMKGSPKFPSCGFSARAVEAIIQCQVPFGYVDILTNPDIRSELPKFANWPTFPQLWVEGELIGGCDIILEMFQKGELHTLLKETAT 104          
BLAST of CN189712 vs. ExPASy Swiss-Prot
Match: GRS17_ARATH (Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 48/101 (47.52%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  384 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 686
            +LK  +E+    +PVML+MKG+PE P+CGFS   V +L   NV   + +IL D E++  +K FS+WPTFPQ++  GE +GG+DI + MH+SGELK+  K +
Sbjct:  152 ALKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDILSDNEVREGLKKFSNWPTFPQLYCNGELLGGADIAIAMHESGELKDAFKDL 252          

HSP 2 Score: 100.138 bits (248), Expect = 1.176e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = -1
Query:  393 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 686
            SL++ ++  +  + VML+MKG P+ P+CGFSS  V+ L   NV   + +IL D E++  +K FS+WPTFPQ++ KGE IGG DII+ + +SG+LK  L
Sbjct:  389 SLEDRLKALINSSEVMLFMKGSPDEPKCGFSSKVVKALRGENVSFGSFDILTDEEVRQGIKNFSNWPTFPQLYYKGELIGGCDIIMELSESGDLKATL 486          

HSP 3 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = -1
Query:  276 SGLS--LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL--KGIASN*KSE*FPAVECKAMDSLSGLLPFSEFLVAIRRS 695
            +GLS  L+  +E  V   PVML+MKG PE P+CGFS   V +L    +   + +IL D E++  +K +S+W ++PQ+++KGE +GGSDI+L M +SGELK+ L  KGI            E    D L  L+  SE ++ ++ S
Sbjct:  277 TGLSETLRARLEGLVNSKPVMLFMKGRPEEPKCGFSGKVVEILNQEKIEFGSFDILLDDEVRQGLKVYSNWSSYPQLYVKGELMGGSDIVLEMQKSGELKKVLTEKGITG----------EQSLEDRLKALINSSEVMLFMKGS 410          
The following BLAST results are available for this feature:
BLAST of CN189712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GRS15_ARATH1.992e-4480.77Monothiol glutaredoxin-S15 OS=Arabidopsis thaliana... [more]
GRXS4_ORYSJ7.586e-3666.04Monothiol glutaredoxin-S4 OS=Oryza sativa subsp. j... [more]
GRXS1_ORYSJ1.690e-3566.04Montothiol glutaredoxin-S1, mitochondrial OS=Oryza... [more]
GLRX5_SACKL1.136e-2349.00Monothiol glutaredoxin-5, mitochondrial OS=Sacchar... [more]
GLRX5_HUMAN1.484e-2347.12Glutaredoxin-related protein 5 OS=Homo sapiens GN=... [more]
GLRX5_DICDI1.484e-2349.47Monothiol glutaredoxin-5 OS=Dictyostelium discoide... [more]
GLRX5_MOUSE2.531e-2347.12Glutaredoxin-related protein 5 OS=Mus musculus GN=... [more]
GLRX4_SCHPO2.531e-2349.02Monothiol glutaredoxin-4 OS=Schizosaccharomyces po... [more]
GLRX4_HAEDU4.318e-2348.98Glutaredoxin-4 OS=Haemophilus ducreyi GN=grxD PE=3... [more]
GRS17_ARATH7.365e-2347.52Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189712 ID=CN189712; Name=CN189712; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTGTGGGTAAACTGCTATTTTATTAATCAGCGAACCCC
ATAAAAATTAACCACTCACTTTCAAAATTCAGGGAGAAAAAGAGGAAATA
ATCAGGAAAGTTGCAGAATACAAACGTCCAGCACTTCCCACAAAATAAAT
TTTTTCTTGCAGCAGTTGAAATTATTTAATTTATTTCTGCTCAGCTGTAT
AAACTAATTAAAAACAAGTAAACGGGTATGTAAAGGAACAAATCCAGTCT
TGGCGGACGAAAAAAAGGACTTATCCGATCGCCTTATAGCAACAAGAAAC
TCAGAAAATGGTAAAAGACCTGATAGACTATCCATCGCTTTACATTCCAC
AGCAGGAAATCATTCTGACTTCTAGTTGGATGCAATACCTTTGAGCTTCT
CCTTTAGTTCACCAGACTGGTGCATATTTAGAATAATATCTGAACCTCCA
ATGAATTCACCCTTGATAAAAATCTGAGGAAATGTAGGCCAATGGCTGAA
AGCTTTTACTGCACTTTTAAGCTCTGGATCTTCCAGAATATTTCTAGCAC
TTATTGGAACATTATATGCGCCCAGTACACGCACTGCCAGTGAACTGAAA
CCACATTGAGGAAATTCAGGAACCCCCTTCATGTAAAGCATCACAGGGTT
TTCTTTGACATCCTGCTCAACAACTTCCTTTAAAGAAAGGCCAGAGGCGT
C
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