DR908843

Overview
NameDR908843
Unique NameDR908843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908843 vs. ExPASy Swiss-Prot
Match: LPAT5_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.071e-37
Identity = 73/140 (52.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    1 AVYDLTIGYKHRCPTFLDNVFGVDPSEVHIHVQRIPTVDMPTSEEKVSTWLMNKFQLKDKLLSDFYSQGHFPRQGTEAELSTAKCLVNFMAVIAL-XXXXXXXXXXXXXXXKVYVFLSCTYLGFATYFNVRPKPVLGLVK 417
            AVYD+TIGYK RCP+FLDNV+G++PSEVHIH++RI    +P  E+ ++ WLMN FQLKD+LL+DFYS GHFP +GTE E +T K L+N +AVIA                 ++YV L+C YL  AT+FN+R  P++   K
Sbjct:  228 AVYDVTIGYKTRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKDINAWLMNTFQLKDQLLNDFYSNGHFPNEGTEKEFNTKKYLINCLAVIAFTTICTHLTFFSSMIWFRIYVSLACVYLTSATHFNLRSVPLVETAK 367          
BLAST of DR908843 vs. ExPASy Swiss-Prot
Match: LPAT4_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.136e-35
Identity = 73/133 (54.89%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 AVYDLTIGYKHRCPTFLDNVFGVDPSEVHIHVQRIPTVDMPTSEEKVSTWLMNKFQLKDKLLSDFYSQGHFPRQGTEAELSTAKCLVNFMAVIALXXXXXXXXXXXXXXXKVYVFLSCTYLGFATYFNVRPKP 399
            AVYDLTI YK RCP+F+DNVFG DPSEVHIHV+R+   ++P +E + S WLM+ F+LKDKLLSDF +QG FP Q  E ELS  KC+  F  VI+L               KVY  LS TYL FATY+  +P P
Sbjct:  233 AVYDLTIAYKPRCPSFMDNVFGTDPSEVHIHVRRVLLKEIPANEAESSAWLMDSFKLKDKLLSDFNAQGKFPNQRPEEELSVLKCIATFAGVISLTVVFIYLTLYSHSCFKVYACLSGTYLTFATYYKFQPSP 365          
The following BLAST results are available for this feature:
BLAST of DR908843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LPAT5_ARATH2.071e-3752.14Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
LPAT4_ARATH1.136e-3554.89Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16971 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908843 ID=DR908843; Name=DR908843; organism=Citrus sinensis; type=EST; length=573bp
GCAGTTTATGACTTGACCATTGGGTACAAGCATCGGTGCCCAACTTTCTT
GGACAATGTCTTTGGGGTGGACCCTTCCGAAGTTCATATTCATGTCCAAC
GTATCCCTACTGTTGACATGCCAACATCTGAAGAGAAGGTCTCTACTTGG
TTGATGAATAAATTTCAGCTCAAGGACAAGCTGCTTTCTGATTTTTATTC
CCAAGGCCATTTCCCTCGCCAAGGTACAGAAGCAGAGCTCTCAACAGCTA
AGTGCCTTGTAAATTTTATGGCAGTAATTGCCTTGACTATCACAACTACA
TATTTCACATTTTTCTCATCTATTTGGTTTAAAGTTTATGTGTTTTTATC
TTGTACCTATTTGGGCTTTGCCACCTATTTCAATGTCCGTCCAAAGCCAG
TTCTTGGCCTTGTGAAAGCTATGTTTAGTCGCAAGCTATCCCAGCACTGA
GCAGACGCAATGTGTTGCTAGACTTATGCTTGTGGTCTTCAAAGTAGCCA
GTAGCTTATGAATTTTTTGTCATCTGAGAAGCTACTAATGTACCATGTTT
TTGTTTTGGTTAAAAAAAAAAAA
back to top